FMO05620.5prime Sequence
1238 bp (1043 high quality bases) assembled on 2008-08-25
> FMO05620.5prime
CAGTCGACATGCACTGTAGTGGACCGTTGGCCGGGCTTACCGCTCTACTG
ACGCTGGTGGCATTTCCTGTCCAGATTAAGACCGATTCCACGGTTTCCAC
GGAGCTCTACGGCGACATAGAGAATACGGAGTACGGCGATTTTGAGTCAC
TAAGTCAAACTCGCGAGCGTCAGCAACATCTGTGCCATCGCGAGGTGCCT
TCTGTGTTTTTCCAAACCGAGCGGGATTCCCCGGTGCGTGGTAATGGATC
CACGATCTACTTCCATCGCATAGAGGTCTGTTGTGCAGGCTACCGTCGCG
ATCCGTATGCCAATGAATGTGTGCCGGACTGCTCCGCATCTTCGCCAGAC
AACTGCCGTAATGGCTTCTGTCGCAGTCCTGGCGTTTGCGAGTGCTTCGC
AGAGTTTGTCCGTAACGAACATGGTGCCTGTATTCACACCTGTCCGATTG
CCTGTCAGCATGGCAGATGTTATTTAAATGGCACCTGTGTCTGCCATCAG
AACTTTGTCCTGGATCAGGAGACCCGGCAGTTCTGCCGGCCGAAGTGTTC
GCAGTCATGTGGCACCCATGAGGAGTGTGTGGCGCCCGGCCAGTGCGACT
GCTCACCCGGCTACCGGAGAACGCCGGACTTGGGATGCCAACCGGTTTGT
GCTCCGGACTGCGGATTTGGCAAGTGCGTGGCGCCCAACCAGTGCGAGTG
CTTCGCCGGGTTCATTAAACGGCCCAATTGGAATGTATGCGAGCTGAGTG
CTACCTGAACTGCGAGAATGGGCTCTGTGAGTCGCGGTACAAGTGTCACT
GCCGCGAAGGATATCGCTACGACGTGAACACCACCAGCTGTTTGCCGGAG
TGCAGCGACAACTGTGGCCAAGGAAATGGGGTGTGCATTGCGCCCGGAGT
GTGCCGCTGCTTCCGAGGATACGAGGTCCACGGTGCCGAGTGTCGCCAAA
GTGTGAGAGATTCTGCGGCAAATACGGGCGTTGTGTGGCTCCGAAATCTG
CGGCTGTGGTGAGGTCAACAGCATTGCGAACGAGCTGTGACGATTATCGA
GCACTGCAGTTGCCATCGGGGAAACCATTCATCGATCGCTGTTTGAGCCG
ACGCCTCATCAGCATCTCACCTTGGAAAGAGAAGCCTTCAATCGCCACTG
GCTTAGACTAATCCCTGTTAAGGCCTCATTATATTCCAAGCCTTCTAGAC
CCTTGCTGTGTGCGCCGCGGGCCGAGAAAGAGTGCCAC
FMO05620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimB1-RA | 1286 | CG33119-RA | 42..1210 | 9..1155 | 5235 | 97.7 | Plus |
| NimB1-RB | 1289 | CG33119-RB | 42..1213 | 9..1155 | 5195 | 97.4 | Plus |
| NimB4-RA | 1478 | CG33115-RA | 796..878 | 631..713 | 205 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13963899..13964457 | 200..757 | 2745 | 99.8 | Plus |
| 2L | 23513712 | 2L | 13964535..13964738 | 757..959 | 970 | 99.5 | Plus |
| 2L | 23513712 | 2L | 13963548..13963738 | 9..199 | 955 | 100 | Plus |
| 2L | 23513712 | 2L | 13964795..13964942 | 958..1096 | 290 | 90.6 | Plus |
| 2L | 23513712 | 2L | 13968941..13969023 | 713..631 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:40:47 has no hits.
FMO05620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:50 Download gff for
FMO05620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimB1-RA | 33..1210 | 1..1155 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:47 Download gff for
FMO05620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33119-RA | 3..1171 | 9..1155 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:39 Download gff for
FMO05620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimB1-RA | 33..1210 | 1..1155 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:39 Download gff for
FMO05620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13963539..13963738 | 1..199 | 98 | -> | Plus |
| 2L | 13963899..13964456 | 200..756 | 99 | -> | Plus |
| 2L | 13964535..13964738 | 757..959 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:50 Download gff for
FMO05620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13963539..13963738 | 1..199 | 98 | -> | Plus |
| arm_2L | 13963899..13964456 | 200..756 | 99 | -> | Plus |
| arm_2L | 13964535..13964738 | 757..959 | 99 | -> | Plus |
