FMO05621.5prime Sequence
1211 bp (929 high quality bases) assembled on 2008-08-25
> FMO05621.5prime
CAGTCGACATGGCTCAGACTCTGGAGGATAAGTCAATCTGGGAGGACGGG
GAGGAGTCCCTGGGCGAGGAGGTGATGCGTATGTCCACCGATGAAATTGT
GAGCAGGACTCGCCTGATGGACAACGAGATCAAGATCATGAAGAGCGAAG
TGATACGCATAACGCACGAGATTCAGGCGCAAAATGAGAAGATCAAGGAC
AACACCGAAAAGATCAAGGTCAACAAGACACTGCCCTACCTGGTGTCCAA
TGTAATAGAGCTGCTGGATGTGGATCCACAGGAGGAGGAGGACGACGGCT
CCGTCACCGTTCTGGACAACCAGCGAAAGGGCAAGTGCGCCGTCATCAAA
ACATCCACTCGACAGGCGTATTTCCTGCCCGTCATCGGCCTGGTTGATGC
CGAGAAACTGAAGCCAGGTGATCTGGTCGGAGTCAACAAAGACTCCTATT
TGATCCTGGAAACCCTGCCGGCAGAGTATGATGCCCGCGTAAAAGCCATG
GAAGTGGACGAGCGACCTACAGAGCAGTACTCCGACATTGGAGGTTTGGA
CAAGCAGATACAGGAGCTCATCGAGGCAGTGGTGCTGCCCATGACGCACA
AGGAGAAGTTTCAAAAACCTTGGCATTCACCCACCCAAAGGTGTCCTTTT
GTACGGCCCCCCTGGAACTGGCAAAACATTGCTGGCCCGTGCCTGCGCCG
CTCAGACAAAGTCCACCTTCCTCAAGCTGGCAGGTCCCCAGTTGGTGCAA
TGTTCATCGGTGATGGTGCCAAGCTGGTGCGCGATGCTTCCGCCTTGGCA
AGGAGAAGCGCCTGCCATTATCTTCATTGACGAGTTGGACGCCATTGGAC
AAGCGTTTCGATTCGGAGAAGCCGGTGACCGTGAGGTCCAGCGAACTATG
TTGGAGCTTCTTAATCAGCTCGATGGGCTCAGTTCCCACTGCAAATATTA
AGGTGATTGCGGCCCCAAATCCGGTAAACATCTGGGATCCTGCTCTGCTG
CCCTCTGTCGCTGGATCGTAAGATCGAGTTCCCCATCCCAACAGAAGCCC
GTGCCGAATTATGCGAATTCCTCCCTAATGAACGTTAGCATGAATTGATC
CAAGCATGGCCCGATTCAGAATGACTCTACGGTCCAAGGCCAGCGTCTGT
GTGGACCTGTATGATATCCACTGCTTCCTCTGTCGCCGAATCTCGCATAC
CCACAAGAACA
FMO05621.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt5-RA | 1627 | CG10370-RA | 136..1234 | 6..1090 | 4795 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23753286..23753711 | 217..643 | 2085 | 99.8 | Plus |
| 3R | 32079331 | 3R | 23753764..23754165 | 639..1033 | 1375 | 94 | Plus |
| 3R | 32079331 | 3R | 23753011..23753225 | 6..220 | 1075 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:42 has no hits.
FMO05621.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:56 Download gff for
FMO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt5-RA | 131..1243 | 1..1098 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:48 Download gff for
FMO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbp-1-RA | 129..1241 | 1..1098 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:57 Download gff for
FMO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt5-RA | 131..1243 | 1..1098 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:57 Download gff for
FMO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23753006..23753223 | 1..218 | 98 | -> | Plus |
| 3R | 23753288..23753708 | 219..640 | 99 | -> | Plus |
| 3R | 23753766..23754239 | 641..1098 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:56 Download gff for
FMO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19578728..19578945 | 1..218 | 98 | -> | Plus |
| arm_3R | 19579010..19579430 | 219..640 | 99 | -> | Plus |
| arm_3R | 19579488..19579961 | 641..1098 | 92 | | Plus |
