FMO05623.5prime Sequence
689 bp (425 high quality bases) assembled on 2008-08-25
> FMO05623.5prime
CGCGACCAGGAGCGCCAGAAGCGCATCACAGGAACAGATGCCATAAAGAC
GCACATTATGGCCGCCCGCCAGATCGCGTCCACCCTGAAGACCTCTCTGG
GTCCCAAGGGTCTGGACAAGATCATGGTCAGTCCCGACGGCGACGTGACT
GTGACCAACGATGGCGCCCCCATCATGAAGCTGATGGAGGTTGACCACGA
GATTGCCAAGCTGATGGTGCAGCTGTCGCAGTCACAGGACGACGAGATCG
GCGATGGAACCACCGGCGTTGTCGTGCTGGCCGGATCACTCTTGGAGCAG
GCCGAGGGACTGATCGACAGGGGCATTCATCCCATTCGCATCGCCGATGG
CTTTGATTTGGCCGCCCAGTGCGCCATCAAGCAGCTGGACGCGATCGCCC
AACCCTTCCCCGTGGACCCGAAGAACAAGGAGCCACTTATCCAGATCGCC
ATGACCACGCTGGGCAGCAAGATCGTGAACAAGTGCCATCGTCAGATGGC
CGAAATGGCTGTGGATGCTGTGCTGAATGTGGCCGACATTGAGAAGAAGG
ACGTGAACTTCGAGCTCATCAAGATCGAGACCAAGGTGGGCGGTCGCATG
GAGACTCGATGCTGGTGAAGGTGTCATCGTTGACAGACCCTCATCATTCG
CAGATGCCAAAGAGCTAAAGGACGTCTAGCTGGCCATTC
FMO05623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cct5-RA | 1948 | CG8439-RA | 180..873 | 1..689 | 3225 | 98.1 | Plus |
| Cct5-RB | 1754 | CG8439-RB | 33..679 | 48..689 | 2990 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12175735..12176382 | 47..689 | 2870 | 98 | Plus |
| 2R | 25286936 | 2R | 12174981..12175028 | 1..48 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:09:03 has no hits.
FMO05623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:01 Download gff for
FMO05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct5-RA | 180..873 | 1..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:36 Download gff for
FMO05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct5-RA | 206..899 | 1..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:08 Download gff for
FMO05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct5-RA | 180..873 | 1..689 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:08 Download gff for
FMO05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12174981..12175028 | 1..48 | 100 | -> | Plus |
| 2R | 12175737..12176382 | 49..689 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:01 Download gff for
FMO05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8062486..8062533 | 1..48 | 100 | -> | Plus |
| arm_2R | 8063242..8063887 | 49..689 | 97 | | Plus |
