FMO05628.5prime Sequence
1177 bp (990 high quality bases) assembled on 2008-08-25
> FMO05628.5prime
CAGTCGACATGAGTGTCGCCGGATTCGAGGACATTGTGGCGGGTCCGCTG
AGCCAATACCTAACTCTCTCCGCCAAAATTGGCGGCGATGTGGCGCAGCA
TGCGGAGCTCGTGAAGAGCGCCTTTGGCTCCCAACTGCAGTACGTGACGC
TGGCCACCCAGATCGCCCAGCCGGCGCAGCCCAAGCAGGCGGAGCTTCTG
AAGCCGACCTCGACGCAGATCAGCGCCATCCAGGACTTCCGCGAGAAGCA
CCGCTCCTCGCCCTTCTTCAACCACCTGTCGGCCATCAGCGAAAGCATTC
CCGCCTTGGGCTGGGTGTGCGTGGAGAAGACCCCGGGTCCCTATGTCAAG
GAGATGAACGACGCCGGCCAGTTCTACACGAACCGCGTGCTCAAGGAGTG
GAAGGAGAAGGATGTTACGCATGTGGAGTGGGCCCGCGCCTGGGTGCAGA
CGCTCACCGAACTGCAGGCCTACATCCGGCAGTACCACACCACGGGCTTG
GTGTGGTCCGGCAAGGGAGCGGCCCCCGCCGGAGGTGCCCCGCCACCACC
GCCACCCGGTGGTCTGCCCCCACCGCCGCCCATGCTGGATCTGAGTGCCC
TCAAGCTGGATAGCGCCGGAGATGATCGCAGCGCCCTCTTCGCCCAGATC
AACCAGGGTGCCGACATCACCAAGGGCTTGAAGAAGGTCACTGGCGACAT
GCAGACCCATAAAAATCCATCTCTACGCACTGGACCGGCTCCGTTCAAAT
CGCCAGCCCAGTCGGGCGGCAGCAAGGCCGTTGCTGCTCCATCAGCTGCG
CAAGCCAAGGCGCCCGTTTTCGAGCGCGACGGAAAGAAGTGGATCATCGA
GTACCAGAAGAACAACACCGGGCTGTTGGTGAGAACGCCGAGATGACAAC
GTGTGTTTGTGTCAAGTGTGAGGGATCACTCTGACGGTCAAGGCCAGGTG
ACCACATCGTCTCGACTCCTGCAGATGCTCCTGCTGTCGATCATGTGCTC
TTGAGTCGTCACTGCCAAGCGTGCAGATGCAGTGCTCGCTCGGTGCGACG
ATCGATCGACAGACGACGCTGCGATGTATCCGTTCAGACTCGTTGGCTGA
TCGTCATTCCAGTCCTCGAAATGAATCGTCCGGAACCAATTACCGATGCC
TTACGGACAATAACCCCATGCCGGTGG
FMO05628.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| capt-RC | 2422 | CG33979-RC | 792..1916 | 7..1096 | 4685 | 96.1 | Plus |
| capt-RA | 2040 | CG33979-RA | 410..1534 | 7..1096 | 4685 | 96.1 | Plus |
| capt-RB | 3049 | CG33979-RB | 1419..2543 | 7..1096 | 4685 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1152770..1153319 | 676..127 | 2750 | 100 | Minus |
| 2L | 23513712 | 2L | 1152428..1152701 | 943..675 | 1090 | 97.4 | Minus |
| 2L | 23513712 | 2L | 1153386..1153506 | 127..7 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:33:06 has no hits.
FMO05628.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:30 Download gff for
FMO05628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| capt-RB | 1414..2510 | 1..1068 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:57 Download gff for
FMO05628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| capt-RB | 1409..2505 | 1..1068 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:25 Download gff for
FMO05628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| capt-RB | 1414..2510 | 1..1068 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:25 Download gff for
FMO05628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1152278..1152700 | 676..1068 | 91 | <- | Minus |
| 2L | 1152771..1153318 | 128..675 | 100 | <- | Minus |
| 2L | 1153386..1153511 | 1..127 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:30 Download gff for
FMO05628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1152278..1152700 | 676..1068 | 91 | <- | Minus |
| arm_2L | 1152771..1153318 | 128..675 | 100 | <- | Minus |
| arm_2L | 1153386..1153511 | 1..127 | 98 | | Minus |
