FMO05629.5prime Sequence
1034 bp (919 high quality bases) assembled on 2008-08-25
> FMO05629.5prime
CAGTCGACATGGGCGACGGTGCTGGAAATTGGTGTCTCATTGAATCCGAT
CCCGGGGTATTCACAGAGCTTATTCGCGAATTCGGATGCGATGGGGCACA
GGTGGAGGAGATCTGGAGTCTCGACAGCGAGTCCTTCAAGAACCTAGAGC
CCATCCATGGTCTGATCTTCCTGTTCAAGTGGGTGCAGGAGGATGAACCC
GCTGGAAAAGTGGTCCTGGATCGGGAGAACATCTTCTTTGCCAAGCAGGT
GATCAACAACGCATGCGCCACCCAGGCGATCTTGAGCCTCCTGATGAACC
TGGATCATGAGGACATCAAATTGGGCGAGACCCTCACCAATTTTAAGGAG
TTCTGCCAGTGCTTCGATCCGTACAACAAGGGATTAACTTTGAGCAACGC
TAGCCAGATTCGCACGGTGCACAACTCCTTTGCTCGCCCAACACTCTTCG
AGCTGGACACTAAGAACCAGAAGAAGGACGATGACGTGTACCACTTTGTC
GGCTATATGCCCATCGGAGGAAGACTGTACGAGCTGGACGGCCTGAGGGA
GGGACCCATTGATCTTGGTGAGATCAAGTCGGAGCAGAACTGGATCGATG
TGGTGCGTCCGATTATTGAGAAGCGCATGCAGCGCTACAGCGACGGCGAG
ATCCACTTCAATCTGATGGCTCTGATCTCGGACAGGCAGCGCATTTATGA
ACAGCAGATTGAGAAGCTGCTTAATCCCGGCGCCCAATGCTATGGACACT
GAGGAGGATCGACAGGCGGAGATCAGTAGCTTGCGCACGTACATAGAGTA
CGAGATTCAGAAAGAAGCGCTACAAAGTGGAGAATGTGCGGCGCAAGCAA
ACTATTTGCCTTCATCGTGAGCTCTTAAAATTCTGGGCGAGACGGACAAC
TAATGCCCATCTACGAGAGGCTAGCTAAGGCGCTAGACGCGAGCAGCGCA
GCGCAAAAGGATACCGACGCAGCTTTCTAGACATTCGTTGGCCGGCGGCC
AGGAAATGGTCTAATTCCATATCTATATCTAATC
FMO05629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uch-L5-RB | 1153 | CG3431-RB | 117..1090 | 7..968 | 4490 | 98.3 | Plus |
| Uch-L5-RA | 1394 | CG3431-RA | 117..1090 | 7..968 | 4490 | 98.3 | Plus |
| Uch-L5R-RA | 1298 | CG1950-RA | 642..835 | 489..682 | 295 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9475853..9476693 | 918..84 | 3845 | 99 | Minus |
| 3L | 28110227 | 3L | 9476771..9476849 | 85..7 | 395 | 100 | Minus |
| X | 23542271 | X | 12055801..12055994 | 682..489 | 295 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:41:31 has no hits.
FMO05629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:17 Download gff for
FMO05629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uch-L5-RA | 111..1100 | 1..979 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:59 Download gff for
FMO05629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uch-L3-RA | 119..1108 | 1..979 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:07 Download gff for
FMO05629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uch-L5-RA | 111..1100 | 1..979 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:07 Download gff for
FMO05629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9475787..9476692 | 85..979 | 97 | <- | Minus |
| 3L | 9476772..9476853 | 1..84 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:17 Download gff for
FMO05629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9468887..9469792 | 85..979 | 97 | <- | Minus |
| arm_3L | 9469872..9469953 | 1..84 | 95 | | Minus |
