FMO05632.5prime Sequence
1244 bp (998 high quality bases) assembled on 2008-08-25
> FMO05632.5prime
CAGTCGACATGGAGTCCGGTAACGTGTCGTCGAGTCTGTTTGGCAACGTG
TCCACCGCGCTGCGGCCGGAGGCGCGGCTCTCCGCCGAAACGCGTCTGCT
GGGCTGGAATGTGCCGCCGGAGGAGCTGCGGCACATTCCCGAGCACTGGC
TAACTTACCCGGAGCCGCCCGAATCGATGAACTACCTGCTGGGCACGCTC
TACATCTTCTTCACCCTGATGTCGATGCTGGGCAATGGACTGGTGATTTG
GGTCTTCTCCGCAGCCAAATCGCTGCGAACTCCCTCCAATATACTGGTCA
TCAATCTGGCCTTCTGCGACTTCATGATGATGGTCAAGACTCCGATATTC
ATCTACAATAGCTTCCACCAGGGATATGCGCTGGGTCATCTGGGATGCCA
GATCTTTGGAATCATTGGCTCCTATACGGGAATCGCTGCCGGTGCCACCA
ATGCGTTTATAGCCTACGATCGATTCAATGTGATCACTCGACCCATGGAG
GGCAAGATGACGCATGGCAAGGCCATTGCCATGATCATATTCATCTACAT
GTACGCCACTCCATGGGTGGTTGCCTGCTACACGGAGACTTGGGGCCGTT
TTGTGCCGGAGGGATATCTGACATCCTGCACCTTTGACTATCTCACCGAT
AACTTCGATACGCGACTCTTTGTGGCCTGCATCTTCTTCTTCAGCTTCGT
GTGTCCCACCACGATGATCACGTACTACTACTCCCAGATTGTGGGCCATG
TCTTTAGCCACGAGAAAGCACTGCGGGATCAGGCCAAGAAGATGAACGTG
GAATCGCTGCGTTCGAATGTGGACAAAAACAAGGAGACGGCGGAAATCCG
GATAGCCAAGCGGCCATCACCATATGCTTCTTGTTCTTTTGCTCGTGACG
CCGTACGGAGTTATGTCGCTGATTTGCGCTTTGGGGATAAGACCCTTTTG
ACGCCCGGAGCACCATGATTCCCGCCTGTGCCTGCAAATGGTTGCCTGCA
TCGATCGTTCGTGTTACGCATAGTCATCCCAGATTACCGCATGGAGCTGA
GATCGATGTTCCCTGCCTGGCGCTCCACGAAAGGGCCCGGAATTCGTCGG
CTGTCCCTTCCACTAGCACCCCCAGGAACCCAGCAGACCCGCCGCCGCTA
GCCTTTCTGACATCTTGGAGCGCAGGCCCATGTATATAGGCTCTATACTA
TCTATATCAAATCCTACTCACACTAGTGTTCCAGATGAGATACT
FMO05632.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh3-RA | 1391 | CG10888-RA | 24..1173 | 8..1146 | 5140 | 97.4 | Plus |
| Rh4-RA | 1349 | CG9668-RA | 132..1082 | 105..1049 | 1035 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20081297..20082427 | 1130..8 | 4785 | 97.1 | Minus |
| 3L | 28110227 | 3L | 16852924..16853240 | 923..609 | 675 | 82.3 | Minus |
| 3L | 28110227 | 3L | 16862004..16862386 | 487..105 | 310 | 72.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:49 has no hits.
FMO05632.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:19 Download gff for
FMO05632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh3-RA | 14..1172 | 1..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:03 Download gff for
FMO05632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh3-RA | 14..1172 | 1..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:21 Download gff for
FMO05632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh3-RA | 14..1172 | 1..1148 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:21 Download gff for
FMO05632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20081279..20082432 | 1..1148 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:19 Download gff for
FMO05632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15907001..15908154 | 1..1148 | 97 | | Minus |
