FMO05633.5prime Sequence
1207 bp (1027 high quality bases) assembled on 2008-08-25
> FMO05633.5prime
CAGTCGACATGGCAGCCGGTACCACACTACAGAAGGCCATCGATCTGGTG
ACCAAGGCCACCGAGGAGGATCGAAATAAGAACTACGCGGAGGCACTGCG
TCTGTATGAGCACGGGGTGGAGTACTTCCTGCACACCATCAAATATGAGG
CACAGGGCGAGAAGGCCAAGGACTCGATACGGGCCAAGTGCCTGCAGTAT
TTGGACCGGGCCGAGAAGCTAAAGGAGTACCTGAAGAAGGGCAAAAAGAA
ACCGATCAAGGAGGGTGGTGAGTCCAGCGCCAAGGACGACAAGGACAAAA
AGAGCGACAGCGATGACGAGGACGGCGACGATCCCGAGAAGAAGAAGCTG
CAGAGCAAGCTGGAGGACGCCATTGTCATAGAGAAGCCAAAGGTTCAGTG
GTCCGATGTCGCTGGCCTGGATGCCGCCAAGGAGGCGCTGAAGGAGGCCG
TTATCCTGCCGATTAAATTCCCGCAGCTCTTCACTGGCAAGCGGATTCCG
TGGAAGGGCATCCTGCTGTTCGGCCCGCCCGGTACCGGTAAATCCTATCT
GGCCAAGGCCGTCGCCACCGAGGCCAATCGCTCCACATTCTTCTCGGTGT
CCAGTTCGGATCTGATGTCCAAGTGGCTGGGCGAGTCCGAGAAGCTGGTC
AAGAATCTCTTCGAACTGGCCCGCCAGCACAAGCCCTCCATTATCTTCAT
TGACGAGATCGATTCGATGTGCTCGGCGAGATCGGACAACGAGAACGACA
GCGTGCGACGCATCAAGACCGAGTTTCTGGTGCAGATGCAGGGCGTGGGC
AATGACACCGATGGCATTCTCGTTCTCGGCGCCACAAACATACCGTGGGT
CCTCGACTCGGCCATTCGCCGTCGATTCGAGAAGCGCATCTACATTCCGC
TGCCGGAGGCGCATGCCCCGCCTCGTCATGTTCAAGATCCATCTGGGCCA
CACCACGCACGTGCTCACGAGCAGATCTCAAGGAGTTGGCCGGCAAAACC
GAGGCTACTCTGGCGCGGATATATCATCGTGTGCGCCGATGCGCTGATGA
ACCCGTGAGGAAGTGCAGACCGCCACGCATTTCAAGCGGCATCGGTCGAG
TCACCACCATAAGGAAATGTCACGATTGCTGTTCCGCTACCTGGCGACAA
GCCCGTCAGATACTGGAGTGGAGTGTCCAAGCACCAGACTCCTTCGAACG
CGCGCCT
FMO05633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps4-RB | 2411 | CG6842-RB | 164..1250 | 8..1089 | 5205 | 99.1 | Plus |
| Vps4-RA | 2031 | CG6842-RA | 164..1250 | 8..1089 | 5205 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17908808..17909668 | 145..1004 | 4145 | 99.5 | Plus |
| X | 23542271 | X | 17908577..17908713 | 8..144 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:49:10 has no hits.
FMO05633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:14 Download gff for
FMO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps4-RA | 157..1272 | 1..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:04 Download gff for
FMO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6842-RA | 162..1277 | 1..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:57 Download gff for
FMO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps4-RA | 157..1272 | 1..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:57 Download gff for
FMO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17908571..17908713 | 1..144 | 97 | -> | Plus |
| X | 17908808..17909669 | 145..1004 | 99 | -> | Plus |
| X | 17909781..17909890 | 1005..1109 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:14 Download gff for
FMO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17802604..17802746 | 1..144 | 97 | -> | Plus |
| arm_X | 17802841..17803702 | 145..1004 | 99 | -> | Plus |
| arm_X | 17803814..17803923 | 1005..1109 | 91 | | Plus |
