FMO05634.5prime Sequence
1195 bp (888 high quality bases) assembled on 2008-08-25
> FMO05634.5prime
CAGTCGACATGGAACCGCACTTTTTTTTCACCGTACTGTGGATGCTATTG
ATGGGAACAAGCAGCACTTACGCACAAGAAATCTTTGGGTATTGTAGAAC
GCCTGATGAGAACAGCGGCACCTGCATAAACCTCCGGGAATGTGGATACC
TATTCGAACTGCTTCAAAGCGAAGAGGTTACGGAACAGGACCGTCGATTT
CTGCAAGCCAGCCAATGTGGCTACCGGAATGGACAAGTGCTTATTTGCTG
TGCAAACAGCCGAATGCGAAACCAGCAACCTCAGTGGGGAAATCATCCTC
AACCTACTCAAACCACTAAACCTACAAAACGCTCTGGGACCAAACTGTTA
CCAATGGCGCCCAATTGCGGTGAAAACTTTGGAGACCGAGTGGTGGGTGG
TAACGAGACGACAAAGAGGGAGTTTCCTTGGATGGCCCTAATAGAGTACA
CGAAGCCCGGTAACGTGAAAGGTCACCACTGCGGCGGATCTCTAATCAAC
CATCGTTACGTTCTGACGGCGGCACACTGCGTCTCGGCTATTCCCAGTGA
TTGGGAGCTGACGGGAGTACGCCTGGGTGAGTGGGATGCGAGCACCAATC
CGGATTGCACAGTCGGTATAAACGGACGACGGGACTGCAACGAACCGTAC
GTAGACTACCCTGTTGAGGAGCGTATTCCGCACCCGCAGTACCCGGGAAA
CTCACGGGACCAGCTAAATGACATTGCGTTGCTGCGATTGCGGGACGAGG
TTCAGTACAGCGACTTCATATTACCAGTATGTCTGCCCACTTTAGCGTCC
CAGCACAACAATATATTCCTTGGCCGAAAGGTGGTGGTGGCAGGTGGGGT
CGCACCGCAGACAAATTTTACGTCCATATCAAGCTGAAGCTGAGTTGGAT
ACCGTACGGACGTCCGAATGCAACAAGATACGCCACCCTTAGAAGGACTG
CACCACCAAACAGATGTGCGCCAGCGAGTTGAGGGGTTGATTCCTGTCCC
GGTGACTCGGGTGCCCCCTTCAGCTCTAGAACTACTCATGAAACTCAACT
ACTACATGCTGGATGATCACCTACGACCACGCCTGTGCCTAAACGAATGC
CGCGTGTACAGATTGATCGTTCTGACCTTGATAATAAACGTTAGTCCAGC
TTCCACATCATGGACCGTCAGTAAGTGTAAACTTATCCGTAGCAT
FMO05634.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MP1-RA | 1468 | CG1102-RA | 79..1202 | 8..1110 | 4795 | 96.3 | Plus |
| MP1-RC | 1495 | CG1102-RC | 340..1229 | 242..1110 | 3625 | 95.3 | Plus |
| MP1-RC | 1495 | CG1102-RC | 79..313 | 8..242 | 1175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4308895..4309483 | 457..1037 | 2305 | 96.3 | Plus |
| 3R | 32079331 | 3R | 4308620..4308833 | 243..456 | 1040 | 99.1 | Plus |
| 3R | 32079331 | 3R | 4308262..4308427 | 77..242 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 4307986..4308056 | 8..78 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:47 has no hits.
FMO05634.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:58 Download gff for
FMO05634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MP1-RA | 79..1116 | 8..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:49 Download gff for
FMO05634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MP1-RA | 79..1116 | 8..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:00 Download gff for
FMO05634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MP1-RA | 79..1116 | 8..1037 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:00 Download gff for
FMO05634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4308264..4308427 | 79..242 | 100 | -> | Plus |
| 3R | 4307986..4308056 | 8..78 | 100 | -> | Plus |
| 3R | 4308620..4308833 | 243..456 | 99 | -> | Plus |
| 3R | 4308895..4309458 | 457..1013 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:58 Download gff for
FMO05634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 134342..134555 | 243..456 | 99 | -> | Plus |
| arm_3R | 133708..133778 | 8..78 | 100 | -> | Plus |
| arm_3R | 133986..134149 | 79..242 | 100 | -> | Plus |
| arm_3R | 134617..135180 | 457..1013 | 96 | == | Plus |
