FMO05635.5prime Sequence
880 bp (850 high quality bases) assembled on 2008-08-25
> FMO05635.5prime
GCATTGTGGTCAACATGCGATCGGCCATTGTCCTGATCATGATCTTCGTG
CTGACGGGGATCAGGAACAGCGAAACGGCCAGCGGTGGCAACCAGATGGA
CTTATCGGACTCAAAAGGCGATCACAAGGATAACAGCAATGCGAGCAATG
GCAATGGAAATGCCAACGATAACGAGGTGTATGTGCCGCCCCTGGTGTCC
AGCATGGTGGCCAAGAGTGGAGGAGGTGCCGGTGGACTCCTGGACAACAT
AACCGCCTACAGCAGCAGCAGCAGTAGCAGTAGCAGCAATGGGAACAACA
ACATGCTATGCCCGTACGATAAGGAAACGCCCTGTGATCGCCTGCAGTTT
CCCTGCATCCGTTGCAACTACAATCATGGATGCATCTACGGCCGGGACTT
GAATGTAACCTGCGAGGTGATCAACAATGTCCAGTGCCTGGGCGAACGGA
GTTTCCAGCGACAAATGAATTGCCGATACTGCTACCAAACGGAAATGTGG
CAACAGAGCTGTGGCCAGCGCTCCAGTTGCAACTCGGCGACGGATAAGCT
ATTCCCGTACCAACTGCACCGTGCACCATGATGTGCTCTGCCTCGGCAAT
CGATCCTTTACCCGCAACCTGCGATGCAACTGGACGCAGGTCTATCGGTG
GAGCACACCCCTGCTGATTAGCCTCACGCTAGGGGGCTTTGGAGCCGATC
GATTCTACTTGGGCCACTGGCAGGAAGGGATTGAAAGCTGTTCAGCTTTG
GCGGCCTCGGCGTCTGGACCATCATCAATGTCCTGCTCATCTCGATGCAT
TATTTGGGGCCAGCGGATGGCTCACTTAAATAGCAAGGTTTCTAAACCAT
TCGTTTGGCTCCCGGGCCAGGTAATGGTAA
FMO05635.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amx-RB | 1211 | CG12127-RB | 84..910 | 1..827 | 4045 | 99.4 | Plus |
| amx-RA | 1422 | CG12127-RA | 295..1121 | 1..827 | 4045 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9246216..9247042 | 827..1 | 3995 | 99.4 | Minus |
Blast to na_te.dros performed 2014-11-28 19:15:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2477 | 245..304 | 120 | 66.7 | Plus |
FMO05635.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:41 Download gff for
FMO05635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 295..1127 | 1..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:51 Download gff for
FMO05635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 295..1127 | 1..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:03 Download gff for
FMO05635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 295..1127 | 1..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:03 Download gff for
FMO05635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9246210..9247042 | 1..832 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:41 Download gff for
FMO05635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9140243..9141075 | 1..832 | 99 | | Minus |
