FMO05636.5prime Sequence
1214 bp (1067 high quality bases) assembled on 2008-08-25
> FMO05636.5prime
CAGTCGACATGCATTCGCCGGCTGCCAAAGTGTCGGGCTACGTCGTCCTG
ATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTCGTGCGTTA
CGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGCTGGATCAG
CAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCCAGGTGATG
ATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAGTACGGATA
CAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGTGCAATGGG
CTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGATCAGCCTC
TCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTGCCCCTGAT
AAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACTCCTGTGCA
TGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATCTGGCTCTT
CATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTCCATGCTTT
TGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACCCGCCAGCG
ACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGTCGGACATC
TTCGCCATGATCGGCACCACCTTCCTGTGGGTGTACTGGCCCAGCTTTAA
CTCCGTTCTGGCCGACGGAGCCGGCGGCGAGCGGGGCCATTTTGAACACG
TTCCTGTCATTAGCCGCGGCAACAGTGACCACCTTCGTTGTATCCGCGCT
TGTCAGCCACGAGAATAAATTGGACATGGTGCACGTGCAGAACTCGACCC
TCGCCGGCGGAGTTGCCGTGGGCACGGTGTGCAACTTGCTGCTCGGCGCC
CACGGAGCTGTCTTAATTGGCATTATCGCCGGCACGGTCTCGGTGCTCGG
CTATCCCTATTAACACCCTTGGATGACGGCCAATCTGAAGCTGCCACGAC
ACCTGGTGGCGTGCACAACCTGCACGGAATGCCTGCCCTGAATTTCGCCA
TGCCTCCGCCATTTACGCCTCGATGGCCACGGTGGGCGAGTACCATTCGA
GCTGCAGAAATTTTCCGGGCCATGTGGGACCCAACGACGGAAACCAAATC
ATGGCCGCTTGCCGAAACGCTACTTGCCAGGGCGGATACAATGTGTTGGC
ATCGCTCGTTACAC
FMO05636.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh50-RC | 1974 | CG7499-RC | 326..1532 | 8..1206 | 5330 | 96.9 | Plus |
| Rh50-RB | 2773 | CG7499-RB | 326..1532 | 8..1206 | 5330 | 96.9 | Plus |
| Rh50-RA | 1836 | CG7499-RA | 326..1532 | 8..1206 | 5330 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4913695..4913956 | 513..775 | 1265 | 99.6 | Plus |
| 3L | 28110227 | 3L | 4917454..4917642 | 773..961 | 930 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4910693..4910862 | 8..177 | 850 | 100 | Plus |
| 3L | 28110227 | 3L | 4912672..4912840 | 178..346 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 4913451..4913619 | 344..512 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 4918323..4918478 | 970..1124 | 420 | 91.8 | Plus |
Blast to na_te.dros performed 2014-11-28 22:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 264..320 | 444..500 | 114 | 66.7 | Plus |
FMO05636.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:38 Download gff for
FMO05636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-RA | 323..1451 | 1..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:52 Download gff for
FMO05636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-RA | 305..1433 | 1..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:00 Download gff for
FMO05636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-RA | 323..1451 | 1..1131 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:00 Download gff for
FMO05636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4910690..4910862 | 1..177 | 97 | -> | Plus |
| 3L | 4912672..4912840 | 178..346 | 100 | -> | Plus |
| 3L | 4913454..4913619 | 347..512 | 100 | -> | Plus |
| 3L | 4913695..4913956 | 513..775 | 99 | -> | Plus |
| 3L | 4917457..4917647 | 776..965 | 98 | -> | Plus |
| 3L | 4918320..4918447 | 966..1095 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:38 Download gff for
FMO05636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4910690..4910862 | 1..177 | 97 | -> | Plus |
| arm_3L | 4912672..4912840 | 178..346 | 100 | -> | Plus |
| arm_3L | 4913454..4913619 | 347..512 | 100 | -> | Plus |
| arm_3L | 4913695..4913956 | 513..775 | 99 | -> | Plus |
| arm_3L | 4917457..4917647 | 776..965 | 98 | -> | Plus |
| arm_3L | 4918320..4918447 | 966..1095 | 93 | == | Plus |
