FMO05638.5prime Sequence
988 bp (955 high quality bases) assembled on 2008-08-25
> FMO05638.5prime
CAGTCGACATGACGCACTGGGAGGACTTCTACAACACGCACCTGCCGCCC
GCGGACTTCGAGGACAATCGCTCCCTGCTCAAGGAGTTCTGCGAACGGCA
CAACAAGCTCCAGAATCGCATCGTCCTCGTCACGTCCGGTGGCACCACAG
TTCCCCTGGAGCACAATACGGTGCGGTTTGTGGACAATTTTAGTGCTGGA
ACGCGTGGCTCCGCCTCGGCGGAATACTTCCTCGACCACGACTATGCCGT
GATTTTCATGCATCGCCACAAGTCGCTGGAGCCCTTCACGCGCCACTTCA
CCGGCCAGCAGTTCTTCGACATGCTGGACATTGCGGACAACAGCCAGAGT
TCGACGATAGCCATCAAACCGGATTCGGTGGACGTGTTTGCTCCGGTGCT
GGCCAAATACAAGATAGCCCGCGAAACGCAGATGATCCTGTACGTGAACT
TCACCAGCGTGGTGGACTACATGTGGCTGCTCCGCGCCGCCTGCGAGTGC
CTGGCCGCCTTCGAGGAGCGAGCCGTGCTCTACCTAGCCGCAGCCGTATC
CGATTTCTACATACCCGAGGACATGATGCCCACCCACAAAATGCAATCAG
GAGATGGAGCGCCGACGATTTCGCTGCAGCTGGTGCCAAAAATGCTGGCC
CCCCTCGCCAGTTTGTGGGTCCCGCACGCCTTTGTGGTGTCCTTTAAACT
GGAAACGGACGAGAGCCTATTGATTGTGAAGGCACGTGACAGTCTCAACA
AATACAAGCACAAGCTGGTCATTTGCCAATGTGCTGCAGACACGCAAGCA
TCGCGTGGTGTTCGTCACGCCCACAGATTCCTACGAGCTGCATTTTGACT
CGCGACAGACGCTGCAAGGACTCGAGATCGAGGACCCCATCGTGGCCGAT
GTGTGGCAAAAGCACGGCGAGTTCATCAGTTACGCTCAAAGCGCAAGCAA
GCTTTCTAGACCATTCGTTTGGCGCCGCGGGCCCAGGT
FMO05638.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppcs-RD | 2192 | CG5629-RD | 649..1586 | 7..944 | 4540 | 99.1 | Plus |
| Ppcs-RC | 4134 | CG5629-RC | 649..1586 | 7..944 | 4540 | 99.1 | Plus |
| Ppcs-RA | 4134 | CG5629-RA | 649..1586 | 7..944 | 4540 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19145481..19145925 | 578..134 | 2225 | 100 | Minus |
| 3R | 32079331 | 3R | 19142088..19142274 | 764..578 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 19147135..19147262 | 134..7 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 19141881..19142011 | 903..773 | 545 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:49 has no hits.
FMO05638.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:56 Download gff for
FMO05638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppcs-RA | 643..1589 | 1..950 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:10 Download gff for
FMO05638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5629-RB | 640..1586 | 1..950 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:54 Download gff for
FMO05638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppcs-RA | 643..1589 | 1..950 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:54 Download gff for
FMO05638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19141881..19142018 | 765..903 | 97 | <- | Minus |
| 3R | 19142088..19142273 | 579..764 | 100 | <- | Minus |
| 3R | 19145481..19145924 | 135..578 | 100 | <- | Minus |
| 3R | 19147135..19147267 | 1..134 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:56 Download gff for
FMO05638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14967603..14967740 | 765..903 | 97 | <- | Minus |
| arm_3R | 14967810..14967995 | 579..764 | 100 | <- | Minus |
| arm_3R | 14971203..14971646 | 135..578 | 100 | <- | Minus |
| arm_3R | 14972857..14972989 | 1..134 | 97 | | Minus |
