FMO05642.5prime Sequence
1203 bp (935 high quality bases) assembled on 2008-08-25
> FMO05642.5prime
CAGTCGACATGGCCGACCTACGGAGTCGCCACAATGGAACCGCTGCCATG
GAGAAGCAAAGCCACAGCCAAACCGGAAGCCACCATCACAACAACAATAA
AGCGCTGGATAAGGAAGCATCGGAGAATGGAAAGCCGGAGAAGAGTGATC
CCATGATATACATAATCTTCGTATCGCTGCTCTTCGACTTACTGGCCTTC
ACCATCATTCTGCCGCTGCTGCCCTCGCTGTTGGAGCACTATCGCCAGAA
CGACAGCTCCGGCTTGTATGCCGTGCTCACGGATCGGGTGCGCTGGTTCC
AGCAGCTCCTGGGCGCCCCGGATCGCTACATATCGGTGCTATTCGGAGGC
TTTCTCGGCTCCATGTTCAGCTTCCTGCAGTTCGTGGCCAGTCCGATTGT
CGGAGGACTCTCGGACTACTACGGACGGAAACCAGTCCTGCTGGCTTGTG
CGAGTGGTATTGCGTTATCCTATCTGATCTGGGCCTGCTCCAGCAACTTT
GCCCTGTTCGTTTTGGCCCGCTTCGTGGGCGGAATTAGCAAGGGCAACAT
ATCCCTGTGCATGTCCGTCATTACGGATGTGTCCAGCGTTAAGACCCGTG
GACGCGGTATGGCCCTTGTGGGTGTGGCCTTCTCGCTGGGCTTTATTGTG
GGGCCCATGATTGGAGCCCTGTTTCGCCATATTTCTCCGATAAAAGTGGA
AGTACTTGGTTTGTGTTGCCCTCTCTGCTGGCGTTTGGCCTGCCATTGGA
GATCTTGTGGTCCTGGCCTGCTGTCTGCGGGAAACGTTGCCCAAGGAGAA
CCTGTTAAGAGATATCATCTGCACTGTCTTATGGCCTGCAGTTGCTCATT
TTTCCGCCTATTAGAATTTGCTGCCATCAAATTGTGCTCAGAAGACATTG
CGCACTGCGATCATTGGCCTGTATACTTCTTGTATCTCTTTCTGTATTCC
GGCTTGGAGTTCCACGTCACATTTCTGATGTCCCTATCGGTTACCTTCAA
TGGATCAGCAGATGTTTTGGCCACGGTGTAATCTGACTTGGCTGCAGATC
GGAGGTCACGCTGCCAGCGATAATCAAGCTATGCACTCTATGTTGACTGA
TGACCCCCTCGATCTCGCTAACGAGTATCGAGACGTAACCCGATACCGTC
ATTCAAGCTCGTCCGTCTGACTCCTGTACATTGTACGGTATCAGGTTTCA
CTA
FMO05642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rtet-RA | 1722 | CG5760-RA | 162..1232 | 9..1057 | 4505 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21108607..21109050 | 9..452 | 2220 | 100 | Plus |
| 3R | 32079331 | 3R | 21109246..21109589 | 452..796 | 1565 | 98.8 | Plus |
| 3R | 32079331 | 3R | 21110048..21110140 | 892..981 | 285 | 94.6 | Plus |
| 3R | 32079331 | 3R | 21109667..21109711 | 809..853 | 210 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:11 has no hits.
FMO05642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:44 Download gff for
FMO05642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rtet-RA | 154..1160 | 1..994 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:30 Download gff for
FMO05642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rtet-RA | 152..1158 | 1..994 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:35 Download gff for
FMO05642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rtet-RA | 154..1160 | 1..994 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:35 Download gff for
FMO05642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21108599..21109050 | 1..452 | 99 | -> | Plus |
| 3R | 21109247..21109588 | 453..795 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:44 Download gff for
FMO05642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16934321..16934772 | 1..452 | 99 | -> | Plus |
| arm_3R | 16934969..16935310 | 453..795 | 98 | -> | Plus |
