FMO05643.5prime Sequence
1251 bp (1005 high quality bases) assembled on 2008-08-25
> FMO05643.5prime
CAGTCGACATGTCATCGGGCACGTTTGTGGATCGAATCGACCCGTTCGCC
AAACGTTCGCTCAAGAAGAAGGGTAAAAAGAGTCAAGGTTCCTCGCGCTA
CAGAAATTCTCAGGATGTTGAGCTGCAGCAATTGCCGCCGCTGAAAGCTG
ATTGCTCCAGCCTAGAACAGGAGGAGCTGTTCATAAGGAAGCTGCGCCAG
TGTTGCGTGTCCTTTGACTTTATGGATCCCGTGACGGACTTGAAGGGCAA
GGAGATCAAACGGGCCGCGCTCAATGACCTATCCACCTATATAACACATG
GGCGCGGCGTGCTTACGGAACCGGTTTATCCGGAAATAATTCGTATGATT
TCTTGCAACCTATTTCGCACGTTGCCGCCCAGTGAGAACCCTGATTTCGA
TCCCGAGGAGGACGATCCGACACTGGAGGCGTCCTGGCCACACCTCCAAC
TGGTGTACGAGGTCTTCTTGCGGTTTCTGGAGTCGCAGGATTTCCAAGCA
ACTATCGGCAAGCGTGTGATCGATCAAAAGTTTGTCTTGCAGCTTTTGGA
ACTTTTCGACTCGGAGGATCCCAGGGAGCGGGACTTTCTGAAGACGGTAT
TGCATCGTATATATGGAAAATTCTTAGGACTGCGGGCTTTTATACGAAAA
CAGATTAACAACATATTCTTGCGATTCATTTACGAAACGGAGCACTTTAA
TGGAGTCGGTGAGCTCTTGGAAATCCTTGGCAGTATCATCAACGGATTCG
CCTTGCCCCTGAGGCCGAACACAAACAGTTTCTGGTTAAGTCCTATTGCC
CACTGCACAAAGTCAATGCCTGTCGCTCTACCACGCTCAACTGGCGTATT
GCATTGTACAATTCCTAGAGAAAGATCCATTCCTTACCGAACCGGTGGTG
CGTTGCCTGCTGAAGTTCTGGCCCAAGACGTTTTTCCAGAAGGAGTCATG
TTCCTGGGCGAGAATGAGAAGATCTCGATGTGATCGATCGCGCAGTTTGT
CAGATTCAGAGCGCTAATCGTCGAATGCAAAATGCTTGTCGAGTCACATT
TCAGTTGCTGACGAGCTCTTTATCTGGGAACAATGAGATACGCATGTTCC
GTATACGAGAAGAAACAATGCGTCTAATTCGATTCATGTTTCAGTTCTAT
ACCGCATCGACAAGCAACTTGCATCACATTTCTTGGCTCGTATACACGTT
GGAAGACGTTCTGGTGAATGAAATTTCAAACATGTGTTTCGGCTGACACT
A
FMO05643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdb-RF | 7086 | CG5643-RF | 1618..2717 | 9..1093 | 4900 | 97.5 | Plus |
| wdb-RE | 3635 | CG5643-RE | 1534..2633 | 9..1093 | 4900 | 97.5 | Plus |
| wdb-RC | 6833 | CG5643-RC | 1365..2464 | 9..1093 | 4900 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27567152..27567353 | 347..146 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 27566861..27567056 | 542..347 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 27566605..27566797 | 733..541 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 27566281..27566543 | 989..731 | 930 | 95.5 | Minus |
| 3R | 32079331 | 3R | 27567412..27567554 | 151..9 | 700 | 99.3 | Minus |
| 3R | 32079331 | 3R | 18175660..18175925 | 396..661 | 325 | 74.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:48 has no hits.
FMO05643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:42 Download gff for
FMO05643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdb-RC | 1365..2447 | 9..1076 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:17 Download gff for
FMO05643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdb-RF | 1203..2285 | 9..1076 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:12 Download gff for
FMO05643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdb-RC | 1365..2447 | 9..1076 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:12 Download gff for
FMO05643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27567416..27567554 | 9..147 | 100 | | Minus |
| 3R | 27566124..27566147 | 1055..1076 | 91 | <- | Minus |
| 3R | 27566207..27566540 | 734..1054 | 92 | <- | Minus |
| 3R | 27566605..27566795 | 543..733 | 100 | <- | Minus |
| 3R | 27566861..27567055 | 348..542 | 100 | <- | Minus |
| 3R | 27567152..27567351 | 148..347 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:42 Download gff for
FMO05643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23393138..23393276 | 9..147 | 100 | | Minus |
| arm_3R | 23391846..23391869 | 1055..1076 | 91 | <- | Minus |
| arm_3R | 23391929..23392262 | 734..1054 | 92 | <- | Minus |
| arm_3R | 23392327..23392517 | 543..733 | 100 | <- | Minus |
| arm_3R | 23392583..23392777 | 348..542 | 100 | <- | Minus |
| arm_3R | 23392874..23393073 | 148..347 | 100 | <- | Minus |
