FMO05644.5prime Sequence
1216 bp (1039 high quality bases) assembled on 2008-08-25
> FMO05644.5prime
CAGTCGACATGGAGGTCAAAGAAGTGGTAGTGATTGTAAAATGGAGTGGT
AAGGAGTACCCGGTGGACCTCACCGACCAGGACACCGTGGAAGTGCTGCG
TCACGAGATATTCCGCAAGACACAGGTGCGTCCGGAACGTCAAAAGCTGC
TCAACCTGAAGTACAAAGGAAAGACAGCAGCCGACAATGTGAAGATCAGC
GCTTTGGAGCTGAAGCCCAACTTTAAGCTTATGATGGTGGGCTCCACAGA
GGCCGATATCGAGGATGCGTGCAGCCTGCCCGATAATATTGGCGAAGTGG
TCGACGACTTCGATGACGCCGATGAACGCGAAGAGTCCGTGGAGCACTCC
GCCGTCTATTTGGCCAAGGTGCAGCGTCGTGTGCGAGACTACAAGATCAA
GGAGTTAGCGCCGCCGCGTGAGGGCAAGAAGCTGCTTGTCCTGGACATAG
ACTATACCCTATTCGATCACCGATCGCCTGCTGAAACAGGCACGGAGCTA
ATGCGTCCGTATCTGCACGAGTTTCTGACTTCCGCCTACGAGGACTACGA
CATTGTCATCTGGTCCGCCACCAGCATGCGCTGGATCGAGGAAAAGATGC
GCCTGCTGGGCGTGGCCAGTAACGATAACTACAAGGTGATGTTCTATCTG
GACTCCACCGCCATGATATCAGTTCATGTGCCGGAGCGCGGTGTGGTGGA
CGTAAAGCCGCTTGGTGTAATCTGGGCCCTGTACAAGCAATACAACTCGA
GCAACACTATCATGTTTGATGACATCCGTCGCAACTTCCTTATGAACCCA
AAGTCCGGCCTAAAGATCCGCCCATTCCGTCAGGCTCATCTCAACCGTGG
CACGGACACCGAGCTGCTCAAGTTGTCCGACTATTTGCGCAAAATCGCTC
ACCACTGCCCGGATTTCAATTCGCTAAACCATCGCAAGTGGAGCCCTACC
ATCCCAGAAGAACTCCGCAGCTTTCTAGACCATTCGTTTGGCGCCGCGGG
CCCAGTAAGTGTCATATCATAATCATATCATATCATAATCACCACTAGCC
TAGAGATCCTGTCATGAATTATGCCTGGAATCTCACAATAAACGCCGCGC
AACCGACGTCTGGAACAATCAATGGAGTTGGAGTATTACGGATTTCAAGA
TCAAGCGACCCGAATCAATAGCCCGCCCTGCACTTCTCGAAACTCCGTTG
TGATATCTCTACTTTA
FMO05644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ublcp1-RA | 1202 | CG6697-RA | 168..1127 | 9..966 | 4735 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23061875..23062676 | 167..966 | 3895 | 99.6 | Plus |
| 3R | 32079331 | 3R | 23061660..23061820 | 9..169 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:49:42 has no hits.
FMO05644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:27 Download gff for
FMO05644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ublcp1-RA | 160..1134 | 1..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:18 Download gff for
FMO05644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6697-RA | 158..1132 | 1..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:15 Download gff for
FMO05644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ublcp1-RA | 160..1134 | 1..973 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:15 Download gff for
FMO05644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23061652..23061819 | 1..168 | 97 | -> | Plus |
| 3R | 23061877..23062683 | 169..973 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:27 Download gff for
FMO05644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18887374..18887541 | 1..168 | 97 | -> | Plus |
| arm_3R | 18887599..18888405 | 169..973 | 99 | == | Plus |
