FMO05646.5prime Sequence
1231 bp (957 high quality bases) assembled on 2008-08-25
> FMO05646.5prime
CAGTCGACATGGACGACGAACTGGAAGACAAGGTGTTCTATCAGACATAC
GTATCGCACATGAAAATCCTGTCCAAATTTGCGGTGGGCTTCTCGTCCAT
CAACTCCCCGCTGGCCTACATATGGAAGCTGTGCCGACTGTATGTCCTTC
GGCCGGAGGTCATCTTCTGCGGCTTGATCCTCTTCGTCCTGTTGCTCTAT
TTGCAAGCGGTAGATGTGTGGAGTCGCAGCATCCTGGGACGCATCCAGGC
AACCCTCGGTCGCCAGAAGGCCGTCAAGATGATGGAGCTGTCGGCCAGTG
CTGGTGATCACCAGAGCTGGGAGGAGATGAAGCAGCAGAGCTCGGCCTTC
GCGGTCCTGGGACGCAGGCCAAGAATGGAGGATAGGTTTATTATCGAGGA
GAACATCAACAACAACACTGGTATCTCCTTCTTTGCCGTATTTGACGGTC
ATGGCGGCGAGTTTGCCGCAGACTTCGCCAAGGATGTGCTGGTGAAGAAC
ATCTACAATAAGATCATCGAGATGTCCAAGCTTCTGAAGACGGAAGGAAA
TTCCGGAGATTACGATAAGAGTCCCTATTTAGCGCGCAAGCAGAGTCGCA
AGGATGCAAACAAGGAGAACACAGAACCGACGGCAGGGGTGATGCGAAAG
GATAGTCTAAGGAAGGCCCACAGCACCACGGCGGATTGTAGTGCTATTAA
GCAAAAGACAACCGAGGCATCCATTGCCGACATCTACACAGTCCAATTAA
ACTCGGCGATGAGAGCCAGTGGGAATTTGGGAGCCGCCAAGGATTCCTTC
CTCAACAACAACAACAACGGACAGAACGGAGCAGCCAATGCGCCACCTCC
AAACTACGAAGCCAAGTGCTACATCGAACACGGGACGTTTTTAACTTTGG
TAAACTGATCACGAACGAGATCATGTCGGCCGACTACAAGCTTTGTTGGA
GCAGGCAAGGAGAGCGACCACATTGCGGGAACCAACGCTCTATACGATAG
TTCAGGCTCAAGCTGATGTGCCATGTGGGCGACTCCGCGGAGTCATGTTA
CGAACTGGCGGGAATCCCATACCGCTTTCATTCGATCCAGCCGCAGCAGT
GCAGAACAAGAGAAAATCCACGATGCAGCGAATCCTCGCCTCCGAAGGCT
TGGCAGGGCGGGAGTTGCCCACGTCCGTGCTCTAAGGAACATTCGCCTTA
GATATGAAATCGTGGGGTAGTATGTACTACG
FMO05646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7115-RE | 2612 | CG7115-RE | 570..1764 | 8..1184 | 5040 | 96.3 | Plus |
| CG7115-RB | 2238 | CG7115-RB | 196..1390 | 8..1184 | 5040 | 96.3 | Plus |
| CG7115-RA | 2646 | CG7115-RA | 604..1798 | 8..1184 | 5040 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7823449..7824028 | 383..966 | 2680 | 98.5 | Plus |
| 2L | 23513712 | 2L | 7822723..7823103 | 8..388 | 1905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:28:03 has no hits.
FMO05646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:26 Download gff for
FMO05646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7115-RA | 597..1753 | 1..1145 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:06 Download gff for
FMO05646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7115-RB | 190..1346 | 1..1145 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:51 Download gff for
FMO05646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7115-RA | 597..1753 | 1..1145 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:51 Download gff for
FMO05646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7822716..7823100 | 1..385 | 98 | -> | Plus |
| 2L | 7823452..7824028 | 386..966 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:26 Download gff for
FMO05646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7822716..7823100 | 1..385 | 98 | -> | Plus |
| arm_2L | 7823452..7824028 | 386..966 | 98 | -> | Plus |
