FMO05648.5prime Sequence
1210 bp (1034 high quality bases) assembled on 2008-08-25
> FMO05648.5prime
CAGTCGACATGTTGGCCCACAGGATGCAGCTTTGGAGGACAACAAACGCG
GCAATGGCCATGACTTCCGCAGCCGGCCGTTTCACCCCACAGGCATCCAC
GGGCAGCAGGAGAGATCTCTACCTCCAAAGGATTACCAGGGGCAGCAGTC
TGCCCTTAGCGGCCCCCGAAAAATGGTCCAATCTCGGCCAGCTTCGTTTC
GCCAGCGGTGGAGCAACTGCAGCGGGAGTTTCAGCCACCAAAGGCGAGGA
GTTCATGCAGGCTGTGCCGAAAACGGAACTAGTGGATCTGCCGGACATAC
CCGCCGCTCCAGTGCCTCCACCCGCCGATGGTCTGAATGTAATGGATGTG
ATGAATGCCGCTGGCGAACCCTCCTTCGCCTCCATTGGCTTGGGCGGCTG
GTCTCCGGTGGGCATGGTACAGAACTGTTTGGAATTCTTGCACTGCACGT
GGGATATTCCCTGGTGGGGAACCATCGCCATTGGAACACTCGCAGTGCGA
ACCATAATCTTTCCATTGGTCATCTTGGCCCAAAGGAACTCTGCCAAGAT
GAACAACAATATGCCGCAGATGCAGATGCTGCAGCTGAAAATGACCGAGG
CCAGGCAGTCGGGAAACGCCATTGAGTCCGCTCGTTATGCCCAGGAAATG
ATGCTGTTCATGCGGGAGAAGGGTGTCAATCCGCTCAAGAACATGGTAGT
TCCCTTGGCCCAGGCACCGCTCTTCATTAGCTTCTTCATGGGACTGCGAC
AGATGGCTAACGCGCCGGTCGAATCAATGCGGGATGGCGGACTCTTCTGG
TTCACGGATCTCACAATGGCGGATCCCTTCTATCTACTGCCCTTATCACC
AGTGCCACGTTGTACCTGACCATTGAGATCGGAACGGATTCGGCTCGCTT
ATCGGCTGCAACATGAACACCATGAAATATGTGCTCAGAGCCCTGCCCAT
TGTATTCTTCCCGTTTACGATGAACTTCCCCGCTGCCATTTGACCTATTT
GGGCGTGCAGTAACTTCATATCGTTGGGTCAGATGCGTGCTATGATTCCT
CGTGAGGAGTCTCAGAATCGAAAGAATGCTGACCATGCCTCATGCACTGC
ACTAGAGGATTCGTCGGCGATGAAGGATCTGATCACATGAAAATCAGATC
GAAGCCAGCCTGACGATCGATTCCAAGTCGCAGGTCCGCGTGTACAGAGA
CTCACAGCTG
FMO05648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6404-RA | 1605 | CG6404-RA | 66..1204 | 9..1127 | 5005 | 97.1 | Plus |
| CG6404-RB | 1815 | CG6404-RB | 277..1415 | 9..1127 | 5005 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10884849..10885793 | 1032..90 | 4475 | 98.7 | Minus |
| 3L | 28110227 | 3L | 10885901..10885985 | 93..9 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:53 has no hits.
FMO05648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:36 Download gff for
FMO05648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RB | 277..1298 | 9..1028 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:07 Download gff for
FMO05648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RA | 307..1328 | 9..1028 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:25 Download gff for
FMO05648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RB | 277..1298 | 9..1028 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:25 Download gff for
FMO05648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10884853..10885790 | 93..1028 | 99 | <- | Minus |
| 3L | 10885902..10885985 | 9..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:36 Download gff for
FMO05648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10877953..10878890 | 93..1028 | 99 | <- | Minus |
| arm_3L | 10879002..10879085 | 9..92 | 100 | | Minus |
