FMO05651.5prime Sequence
1211 bp (946 high quality bases) assembled on 2008-08-25
> FMO05651.5prime
CAGTCGACATGAAGGTGCAGGACATGGACAAATGTGCTCCCAGCAGCGAC
TGGAACGTTCTTTACTGGGTGCTGGGCACGGTCCTGATGCCGGTGGCACT
TCCACTGGCCATCATCAACATTTGGCAGCGATTCCAGGCCCAGAAATTCC
GCAATCAATTGCCCGGCAAGGTGGTGCTCATCACGGGGGCCAGTTCGGGC
CTGGGCGAATCTCTGGCCCACGTCTTCTACCGCGCTGGATGCAGGGTTAT
TTTGGCGGCACGTCGCACTCAGGAATTGGAGCGGGTTAAGAAGGACCTCC
TCGCATTGGATGTGGATCCCGCTTATCCGCCGACAGTGCTTCCCCTGGAT
CTGGCTGAACTGAACTCCATTCCAGAATTTGTCACCCGGGTGCTGGCCGT
GTACAACCAAGTGGACATACTCATCAACAACGGAGGGATCAGTGTGCGAG
CCGATGTGGCATCCACGGCAGTGGATGTGGATCTCAAGGTGATGGTGGTT
AACTACTTTGGCAGCGTTGCCCTGACCAAAGCTCTACTTCCTTCGATGGT
GAAACGTGGTAGTGGTCACATATGCTTCATTAGCTCTGTTCAGGGAAAGT
TTGCCATTCCCCAAAAGGGCTGCCTATTCCGCCTCGAAACATGCCATGCA
GGCTTTTGCCGATTCCCTGCGAGCCGAGGTGGCAAATAAAAACATAAACG
TGTCCTGCGTGAGTCCTGGCTACATACGCACCCAGCTGTCCTTGAATGCA
TTGACAGGATCGGGAAGCAGTTACGGCAAAGTGGATGAAACCACGGCCAA
GGCATGTCACCGGAATAAACTTGCAGAACGCATTCTGCAGTGCATTCTTC
GCAAGAACCGGGACATTATTGTCAGCGATGTCCAGGCCAGATCGCCTACT
ATCTTCGTCATCTTGCCCGAGTCTCTACTTTTGGATCATGGCCAAGCCCG
CGTCAAACTGAGGAATGCTGAGAAAAGTCACTGCAAGCTTTCTAAACATC
GTTGGCGCCGGCCCAGTAATGGTCTATCATATCTATCATATCTAATCACA
CTAGCTAGGAATCTGGTCTGACTTAGCTTGAATCCACAATAAAACGCCCG
GCGCACCGAGGTTTGACAAATCGAATGGATTCGAGCTTACGGAATCTACA
CGATTCAGGACCGATAAATGGCCGCCTGCATCTGACGATGTGTGAATTAC
TTGACATTCGC
FMO05651.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7601-RA | 1250 | CG7601-RA | 95..1064 | 9..976 | 4605 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29735714..29735961 | 778..530 | 1180 | 99.2 | Minus |
| 3R | 32079331 | 3R | 29736016..29736233 | 531..314 | 1090 | 100 | Minus |
| 3R | 32079331 | 3R | 29736487..29736651 | 173..9 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 29736289..29736435 | 315..169 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 29735455..29735655 | 976..779 | 655 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:23:29 has no hits.
FMO05651.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:25 Download gff for
FMO05651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7601-RA | 95..1072 | 9..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:25 Download gff for
FMO05651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7601-RA | 170..1147 | 9..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:23 Download gff for
FMO05651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7601-RA | 95..1072 | 9..982 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:23 Download gff for
FMO05651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29735447..29735655 | 779..982 | 94 | <- | Minus |
| 3R | 29735714..29735959 | 532..778 | 99 | <- | Minus |
| 3R | 29736016..29736232 | 315..531 | 100 | <- | Minus |
| 3R | 29736290..29736433 | 171..314 | 100 | <- | Minus |
| 3R | 29736490..29736651 | 9..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:25 Download gff for
FMO05651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25561169..25561377 | 779..982 | 94 | <- | Minus |
| arm_3R | 25561436..25561681 | 532..778 | 99 | <- | Minus |
| arm_3R | 25561738..25561954 | 315..531 | 100 | <- | Minus |
| arm_3R | 25562012..25562155 | 171..314 | 100 | <- | Minus |
| arm_3R | 25562212..25562373 | 9..170 | 100 | | Minus |
