FMO05652.5prime Sequence
1192 bp (1030 high quality bases) assembled on 2008-08-25
> FMO05652.5prime
CAGTCGACATGGTGCGACAATTGATACTCGTCCTTTCTCTGATTCTCTTC
TGCGGCAGCTCACATGCTGTTGTCAGTGAATTGGCCCGTCAGAGCGAGTC
TGCCATCCAGGGTTTGGCAGACATAAAGATGGCGCCTCTACGTTACTTAG
ATGTTCTCTTTGGTGGAAATCCCGGAGGACTTCGGGGTCTAGACGGTGGA
AATTCAGCATCTTTATCAACCTTACAAGCAGCTAAAGTAGCAAATATATT
GGCAAGAGGTGATATCGCCAGTTCCGGATATAGTAAAATTTCAGCTGGCG
TTGGCAAGGGAAGCGACCTAATCACTATTATTAAGAACACTCGATCCTAC
GATCCGTACCTTATTCCACCAGGTATTCCTGGCTATAATTATCCACTTGG
ATGGCCCCTTCGTTATCCATTAGGTCCTTATTGGCCTAATCGACCACCAT
GGCTACCAATTAATTCTCCACCGATACGTCCAGGTGGACTTTTCCCTGGT
GGACCTTCCCCTGGTGGACCTTCCCCTGGTGAACCTTCACCTGGTGAACC
TTCACCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGGACCTTCCC
CTGGTGGGCCATCCCCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGT
GGACCTTTCCCTGGTGGATCTCCACCTTCACCAGGCGGACCACTTGGACC
ATGGCAATTTCCATGGATACTATGTGGTCCTCGGCCGAACCGTCCAGGAA
GACCTTTCCCTGGTGGTATCCTTCCTGGTCATTTAGACGGTTCGGTAGTT
CCAAATAGTGTGCTAAATGTTGCTGGCGGATCTTTGGAAACGGTGGACTG
TTCGGTACGGGAATTTTCGGACACATGGACTTTCGGAACTGGATTTCTTA
GTGGACCTTCGTTAGACCCTTTGGCATTTTACTCCATCGGAAATTTCTTT
GATCACTAGAAACTATCGATTAGTTCACTAGTCAATTATTCCATCTTGGT
GGAAATTTGGTCTTTAGTCGCGATGCAGGTCTATCACTGATGTGCGCCAG
TGCATCGTAAAGCTATAGACAACTTGCTCTTCTCGGAATTCTGGGACCAG
CTTCTAGACATCTGGCGCGGCGGGTATGGCTATCTACTACTATCAATCCA
TGCCTAGATTCTGTCAGACCTAGCTTGATCTCACCCATTATT
FMO05652.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Peb-RB | 1529 | CG2668-RB | 24..1075 | 9..1037 | 4680 | 97.7 | Plus |
| Peb-RA | 1202 | CG2668-RA | 24..1075 | 9..1037 | 4680 | 97.7 | Plus |
| Peb-RB | 1529 | CG2668-RB | 555..683 | 495..623 | 480 | 91.5 | Plus |
| Peb-RA | 1202 | CG2668-RA | 555..683 | 495..623 | 480 | 91.5 | Plus |
| Peb-RB | 1529 | CG2668-RB | 570..682 | 495..607 | 460 | 93.8 | Plus |
| Peb-RA | 1202 | CG2668-RA | 570..682 | 495..607 | 460 | 93.8 | Plus |
| Peb-RB | 1529 | CG2668-RB | 573..683 | 483..593 | 420 | 91.9 | Plus |
| Peb-RA | 1202 | CG2668-RA | 573..683 | 483..593 | 420 | 91.9 | Plus |
| Peb-RB | 1529 | CG2668-RB | 588..683 | 483..578 | 345 | 90.6 | Plus |
| Peb-RA | 1202 | CG2668-RA | 588..683 | 483..578 | 345 | 90.6 | Plus |
| Peb-RB | 1529 | CG2668-RB | 603..683 | 483..563 | 270 | 88.9 | Plus |
| Peb-RA | 1202 | CG2668-RA | 603..683 | 483..563 | 270 | 88.9 | Plus |
| Peb-RB | 1529 | CG2668-RB | 629..692 | 494..557 | 230 | 90.6 | Plus |
| Peb-RA | 1202 | CG2668-RA | 629..692 | 494..557 | 230 | 90.6 | Plus |
| Peb-RB | 1529 | CG2668-RB | 633..692 | 483..542 | 210 | 90 | Plus |
| Peb-RA | 1202 | CG2668-RA | 633..692 | 483..542 | 210 | 90 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25175683..25176617 | 951..23 | 4360 | 99.3 | Minus |
| 2R | 25286936 | 2R | 25175972..25176100 | 623..495 | 480 | 91.5 | Minus |
| 2R | 25286936 | 2R | 25175973..25176085 | 607..495 | 460 | 93.8 | Minus |
| 2R | 25286936 | 2R | 25175972..25176082 | 593..483 | 420 | 91.9 | Minus |
| 2R | 25286936 | 2R | 25175972..25176067 | 578..483 | 345 | 90.6 | Minus |
| 2R | 25286936 | 2R | 25175972..25176052 | 563..483 | 270 | 88.9 | Minus |
| 2R | 25286936 | 2R | 25175963..25176026 | 557..494 | 230 | 90.6 | Minus |
| 2R | 25286936 | 2R | 25175963..25176022 | 542..483 | 210 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:04:53 has no hits.
FMO05652.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:39 Download gff for
FMO05652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Peb-RA | 16..1065 | 1..1029 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:26 Download gff for
FMO05652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Peb-RA | 16..1065 | 1..1029 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:18 Download gff for
FMO05652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Peb-RA | 16..1065 | 1..1029 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:18 Download gff for
FMO05652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25175590..25176616 | 24..1029 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:39 Download gff for
FMO05652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 21063113..21064139 | 24..1029 | 97 | <- | Minus |
