FMO05653.5prime Sequence
1202 bp (1030 high quality bases) assembled on 2008-08-25
> FMO05653.5prime
CAGTCGACATGGGCCTTGGAAGCGGTGACAGGGTAAATGAAACCGACCAC
TTCAGCTTTCCCGCAAGCTGGCAGGACAACGGTAGAATGCAGGTGCAGTT
CGCCATGTTTCGATCGAGGCATCTGGATGCGGAGGGCTACGACGCAAAAA
TGAATTTCTGGATGGATTTAATTGCAAAATATCTAAAGTTCAGCGGACGA
CCAATCTTCAGCCTGCGGGATCTGCAACTGCTGTTCATGAGGGGTGACCA
ACTGCCCGCCTGCCTGGACACCGTGATATCCGAGATGCAGCAGAGGAAGC
AGATCCGCTCTCGCAGTGAATTTGAGTACGATCCGGCCAATTCCTGGGGT
GGTTGGCTCGTCAACAGCCTGGTAAAGCGCCCCCTTTCATGGAGCTGGTC
GAAAATCAAGCACAGCGTGGTGACGGAGGACCTGGAAGCCTCCGCTTTAA
TTGAATGGATTCACCTAGATGCCTTAAACAACACTTGCGATCTCATCGCC
GAAAAAGTCCTGTCGGAAAACACTGGAAAACTACTGCACTTTAATGCTTT
GAAAACGCTTTGTAAGACTCACGGAGTTCCCACTTACTCAGACAAAGATC
TATGCGCTTGCCTGTTGGCCTTAAATGTTCGTCAAATCTTGGGCCTAGAA
TTTAAAGTAGAAAAAGGCATACGCCAAATTCACTTGATCAAAATACCAAA
AAAACCTGGCGACGATCTTAATATAAGCCAAGAAGACCAGGCCGTCCACA
ATCTTCAGAATACCCAAGCTCAGTTACTCAAGCAGTTGGAGGACCTAGAG
GAGGAGATCAAGGTGAACGATGACAAAGTGCGCCAGTACATGAAGGAGAC
AACGGCAAATGGCAAAACCTATCTACGAAAAGGCATCTCCTGGAAAGAAT
CATGAACGTCGCAGTCTTGCCCTGCACACATCGATCTCTTCTGTCAGTGT
GATGAGCCCAGACAGTGCGTTGTCTGGATGCTACAAGATCGGATCAATAC
TGAGAGTTTTCTCGATTCTGGATGAGTACGACAATGTCCACGAGTATTGC
GATGGGCGGACCGCTCGACCAGCATCGGAGTCAGACTATGTCAATACGGT
TGTGGAAACGGGCAGGAAATGATCACTGAACGATTGCGGTAACTGGCTGA
ACTCGCCCGCTTACGTTATCAAATATATACCCTAGGGCGGAGGTGTATAT
AC
FMO05653.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5498-RB | 1523 | CG5498-RB | 87..1184 | 9..1078 | 4775 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20383553..20384023 | 479..9 | 2355 | 100 | Minus |
| 3L | 28110227 | 3L | 20383281..20383500 | 699..480 | 1100 | 100 | Minus |
| 3L | 28110227 | 3L | 20383019..20383219 | 896..700 | 825 | 97.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:13:35 has no hits.
FMO05653.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:49 Download gff for
FMO05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5498-RB | 87..1188 | 9..1084 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:28 Download gff for
FMO05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5498-RB | 72..1173 | 9..1084 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:48 Download gff for
FMO05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5498-RB | 87..1188 | 9..1084 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:48 Download gff for
FMO05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20383010..20383219 | 700..904 | 97 | <- | Minus |
| 3L | 20383281..20383500 | 480..699 | 100 | <- | Minus |
| 3L | 20383553..20384023 | 9..479 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:49 Download gff for
FMO05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20376110..20376319 | 700..904 | 97 | <- | Minus |
| arm_3L | 20376381..20376600 | 480..699 | 100 | <- | Minus |
| arm_3L | 20376653..20377123 | 9..479 | 100 | | Minus |
