FMO05654.5prime Sequence
1212 bp (1025 high quality bases) assembled on 2008-08-25
> FMO05654.5prime
CAGTCGACATGACAATCTTGTGGCTGACCTTGCTGGGCCTTTGTCTCAAT
CTGAAACTCGGGTCGGCGTTGCACGTGCCGCAGCATAATTGTGAGAGGTA
TTTCTCCTACTACAAAGAGGACAGTGGAGCCTACATTGGCGTCTTCACGG
CGCCACGCGCTGGTGTGAACAGCCTATCATGGGAGGTGGTTTTCACTGCT
CACGGAACTGGTGAGGCAAACACTGTGGGCTCACTCATTCCGTATCCCAA
TAAGGAAAGGGCCTTTGAAAAGATACACAGCGGAGAACGTGGCGAGGTGT
TTGTGCGTTTCACGGATTTTGGAAACGAGCTGCCCAAACTTGTCCGGGCG
GAATTCAACGGCGAGGTTCTGTGTCAAAATGAGGAGTATGATGCCCCTTC
AAGCACAATGACCCGACGCCAGTCCATGTCCACCTCAACGCCAATTAGTC
AAAAGTCAGCACCAAGAGAAATAGTGCGTCAGCGGCGTCCGCCGCCGAGC
ACACCGAGCAATGACCCCAATCCTTTCCTTCCTTCAATCATGCCCAGAAT
AGATTCGGACTTTGAGGAATGCGGCGTTGAGGGCTTTTCGCCTCTTCAAA
TCGGAGGCGACCTGGTGACCCGCGGTCAGTACCCCTGGCTCGCGGCCCTT
TACGAAGGTGTTGGCACGGCTACATACAAATGCGTGGTGTCGGTTATCTC
CAAACGGACTGTGATCACGGCAGCTCACTGCATTTATGGAAAGAGCGCCA
GCCAGCTTTGGGTCTATTTGGGCAGGCATGATCGCAACGAGAATCCTGAG
AATGGAGCCTCCCTGGTTAGCGTGACCAGCGTGCTGACTCCGTCCGCCTA
CGAGGGCAATCCAGTTCCGGATGCGGACGTTGGTCTGCTGGTGCTGACCT
CTCCGATGGTGTACCACAAGTACATTCGACCCCTCTGCCTTTGGGGCTCA
AATATGGGATTGCCACGAATGAGGCGATACTGGAGCAGTAGCCGGGTTGG
GGCTACGACAAGAGTGCCCAGAAGACGCGGTTCCAAGAAAGTGTAGTGTC
GATCGTGCCCGGATCAGTGCTTCAAGGAAATGAAGCGGGCGGAGACTTCA
TCACGCGGCGGACGTCTGGGCCGGCATCGAATCCATGTCCTGCTCGGAAC
GGATCGTCTGGATCGCCTGCTACATGAAGTTACGTTCGGAGGTGACTCTC
TTTACGCTGCAC
FMO05654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-RA | 1449 | CG9631-RA | 47..1172 | 9..1126 | 5210 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14225375..14226121 | 1126..388 | 3085 | 96.7 | Minus |
| 3R | 32079331 | 3R | 14226505..14226716 | 220..9 | 1045 | 99.5 | Minus |
| 3R | 32079331 | 3R | 14226261..14226438 | 391..214 | 875 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:09 has no hits.
FMO05654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:04 Download gff for
FMO05654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 36..1179 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:29 Download gff for
FMO05654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 23..1166 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:23 Download gff for
FMO05654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 39..1182 | 1..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:23 Download gff for
FMO05654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14225389..14226121 | 388..1113 | 97 | <- | Minus |
| 3R | 14226265..14226436 | 216..387 | 100 | <- | Minus |
| 3R | 14226510..14226723 | 1..215 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:04 Download gff for
FMO05654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10051111..10051843 | 388..1113 | 97 | <- | Minus |
| arm_3R | 10051987..10052158 | 216..387 | 100 | <- | Minus |
| arm_3R | 10052232..10052445 | 1..215 | 98 | | Minus |
