FMO05655.5prime Sequence
1256 bp (1019 high quality bases) assembled on 2008-08-25
> FMO05655.5prime
CTTATCAGTCGACATGTTCATTCCCACACACCTTATTTGCAATACTAATC
CGGCTGTAAAGTCTGCCGTCAAATCGGTTAAGGAGGGCTCGCGGGGCATG
AAGACCGCCTATAAGGGATTCAAGACAAAGCTGCGCGAGAACGGAAACCA
GTTTGGTGGCACGCACTTCCACTTTGGACTTGGCTCCCCGAATCATTCGG
ATCGTCCTGACGGCACCAGCGGAGGATACGTTCGTGGTGGCAAGGCCATC
GGGGCTGCACACCACTCGGCGCCCAGTTCTCCAGTGACCAGCAAGCGTCT
TGATGGAATTGCCTCCGTCACGGGAAGCAGCGGCAGCGGTGGATCCGGCG
CCAGGGAGCCGCGGGAGTTCCTGCGACGCGGTCCCGTCCCGCTGGCCATG
TCTAGCTCGAGCAGCCACATTCAGCCGAACGGCCATGCGTACGGTGCGAG
TGCTGGTGCTCATTATGGTCATCATCTCGCTGCGTCTCCTGCTGTTAGCT
CGGCGAGCTCGCTCTGCTCATCTTCGGAGATGAACCTGTCGCAGGAACTG
CAGAACCATCCGCTTTTCAAGACGCCGGCAGTGGACCGCAGCCTTAAGCC
AAACGCAGAGCACAGGCGAGGAGCAGCACCGCCAGCCCGTCCACCGCCAC
CGCAATCTACGCCCGCCTCCTACTACAATCATCCCTATGCCGCGCATCCG
CACGTGGAGTCTAAGCCGCCAAGGCACACCTCCACGCCCACCAGACCGCG
TCAGCCCCTGCCTACCGCCGATTCCAGCAGCTTTGATAGTCCGCCGGACG
TACAATCTCCACCGATTCCGCCCCGGAGGCAGGGCAGCTCGAATGCGATT
GTGGCGGCCACGGCTGCAGCCGTCAGTGCAGAGATTAGCAAACTGGAACG
TAACTGCTGGAAAGGACGAGCCCGGAAATGATCTGTACGCAGCTCGAATG
CATCCTCGTCATCGCGACTCATCCTCCTCGGGCGCATCGTTGTGACGCGG
CGTCGACGTTCTCGCATCTTATGTGTCTGATCCGCCAATCCGACCCGCGG
CCAAGAAAGAGCAACAGCAGCATGGAAGACGCCATGAATGATCTGAATTC
GCTGAACGAAAGCAACACACCCAGCTTCGAACTGGAAGAAACTCGATCCG
CGCTCAATCCGAAATGTCTCCTGACCCGGGTGACCCGCCTCAACAGACAA
TGGCGATAATGCACACACTGCCGCCGTGGCTTAAGGAGGTGGGTGCGATA
AGTCTA
FMO05655.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-RE | 3655 | CG18659-RE | 1758..2914 | 14..1163 | 5185 | 97.3 | Plus |
| CG18659-RA | 3519 | CG18659-RA | 1648..2778 | 40..1163 | 5040 | 97.2 | Plus |
| CG18659-RI | 3513 | CG18659-RI | 1648..2772 | 40..1163 | 4975 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9125551..9126067 | 592..76 | 2585 | 100 | Minus |
| 2R | 25286936 | 2R | 9124772..9125220 | 1036..593 | 1900 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:13:44 has no hits.
FMO05655.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:57 Download gff for
FMO05655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 1752..2876 | 7..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:31 Download gff for
FMO05655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RB | 626..1750 | 7..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:53 Download gff for
FMO05655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 1752..2876 | 7..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:53 Download gff for
FMO05655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9124744..9125220 | 593..1061 | 97 | <- | Minus |
| 2R | 9125551..9126066 | 77..592 | 100 | <- | Minus |
| 2R | 9126181..9126213 | 44..76 | 100 | <- | Minus |
| 2R | 9127027..9127062 | 7..43 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:57 Download gff for
FMO05655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5012249..5012725 | 593..1061 | 97 | <- | Minus |
| arm_2R | 5013056..5013571 | 77..592 | 100 | <- | Minus |
| arm_2R | 5013686..5013718 | 44..76 | 100 | <- | Minus |
| arm_2R | 5014532..5014567 | 7..43 | 94 | | Minus |
