FMO05657.5prime Sequence
785 bp (415 high quality bases) assembled on 2008-08-25
> FMO05657.5prime
CAGTCGACATGTTCGCCAGCAACACGCGTAATCTTATGCGCAGCAGCATT
TTGCAGCGATGCAAGAGCACTTTGGTGGTGGCTGAGCACAACAATGAGGT
ACTCAATCCGATCACCCTGAACACCATCTCTGCGGCCAAGAAGATCGGTG
GTGACGTCACAGTTCTGGTGGCAGGCACAAAATGCGGACCCGCTTCCGAG
GCTCTTTCCAAGGTGGATGGCGTGACCAAGGTTCTGGTGGCCGAAAATGC
CGCCTTCAACGGATTTACCGCGGAGTCGCTGACCCCATTGGTCCTGGCCG
CCCAGTCTCAGTTCAAGTTCACCCACATCCTGGCCGGAGCTTCGGCTTTC
GGCAAAAAACGTGCTGCCACGCGTGGCGGCCAAGCTGGATGTGGCCCCCC
ATTTTCGGAGATCATCCTTGTTTATTTGGAACGACACCTTTTTGGGGCCC
ATTCTTACCCGGAAATGCCTTCCCTCCCCCTGGAATCCCAGGGCGCCCGT
TAGGGGTCCCTAGGAGGAGCACCATTTTCCCCCCGGCACCCCCCACGGGT
GGAAAGGGAACCGTGGAAACAGGCCCACTTGGGGGATTCCCCACCACCCC
CAATTTTCCAACGCACACCCATCCCCCCGGGGAGGCGGGGTGTGCTAAAA
AAAAGAAATATTCCGGAGGAAAGGGGCCGAAGCAGAAAATAAACTATAAC
GCAAAAAAATGAGCGTGTGGGCCCCCCGCCTCTGTGTCTGTTTCACATAA
TATAACAAGGATCACATCTGCGCACTTCTCCTCTC
FMO05657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wal-RB | 1579 | CG8996-RB | 77..630 | 9..567 | 2040 | 92.2 | Plus |
| wal-RA | 1212 | CG8996-RA | 77..630 | 9..567 | 2040 | 92.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11689518..11689888 | 567..192 | 970 | 87.5 | Minus |
| 2R | 25286936 | 2R | 11690445..11690586 | 192..51 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 11690678..11690719 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:05 has no hits.
FMO05657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:07 Download gff for
FMO05657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wal-RA | 69..481 | 1..416 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:32 Download gff for
FMO05657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wal-RA | 81..493 | 1..416 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:55 Download gff for
FMO05657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wal-RA | 69..481 | 1..416 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:55 Download gff for
FMO05657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11689667..11689888 | 192..416 | 97 | <- | Minus |
| 2R | 11690446..11690586 | 51..191 | 100 | <- | Minus |
| 2R | 11690678..11690727 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:07 Download gff for
FMO05657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7577172..7577393 | 192..416 | 97 | <- | Minus |
| arm_2R | 7577951..7578091 | 51..191 | 100 | <- | Minus |
| arm_2R | 7578183..7578232 | 1..50 | 92 | | Minus |
