FMO05660.5prime Sequence
1196 bp (1035 high quality bases) assembled on 2008-08-25
> FMO05660.5prime
CAGTCGACATGAATAGTTTAGAAGTAAATGAGTCTGATGCTGCTCCAGAA
GCATCACCCAACCGAAATCCTTCAGTGGATTCGGGTCCTGGCTTTGTCAG
GCTGAAAACCAGGCAAAAGAAGCTGCTGCGAAAGGCTCTTCATGGAGGGC
TGACCAGAGAAAAGGCTCTGGAGGTGGTGCAAGCTCTTCCCATAGTCAAG
GGACTCCTACCCGATCCTTATGAAAACCAAACCGCCAATCCGTACCCCTC
GGGTTTAGTTGAGTGCGTGAGAATCGGCTTAGCTGCGGAGTCTGCTGGGA
CTTCCCTGACCAGCGAGCAAATGACCATGATCAAGGAGGCCATTATCGAC
GTCACCGTGGAGAAATCTGGCAGTCAGAAGCCCCAGTTCGAGGGATGTGT
GGCTCGAAGAGGATGGCTCCTTGTGACTTGTTCCAACTCCTCCACCTCAG
AATGGTTCAAACAAAATTTTTGCCACATCCAGTCGAAAGTAACCACTAAG
CTGAAGCTAATGGATGAGTCTGAACTGCCAAGGAGGAATGTCGTTCTCGG
ATATTTTCCAGATAGTCTAACCACCAGCAGCCAGAAGGTCTTGGAAATCA
TTCAGGCCCAGAACCCAGTCTCAACGGCGGAATGGAGGGTTATGAACAGG
TTGACCCACGGTGAGCTACTGCATCTTTCCATGGCAGTTGACAATGAATC
GCACAAGAAACTGATCGAACTGAATGGAACGATATCCTTTCGATTCGGGC
GTGTAAAACTTTGTTTGAAAAACTCCCTCGATAGGAATCCGTACTAAATG
GTAGAAAAGAAACGTCACCAAATAGAAAATCCCTGGACAGGCTGCTGTAA
GTCGGGAAATTGTGCCTGCTCCGCAGGACCAGTGATCACAAATGATAGTC
CGTGAAGCAATCCCATAATCCTTGACTCAGTCATAGTAATCCTATGATGC
AGTGAATCACACAGATGCTCAAGTATGATCCTTATAGTCCAAGGTACCTT
CGTCGACTTTTTGCATGCCAGCTATTCGGGATTGGGCTTTGGGATGAAGA
GACAGAGCTGAACACGACCTGGCAGAAACTGCCTAGCTTTCTAGAACAAT
CGTTGGCGCCGGGCCAGGTACGGTCCTAACTATCTATGCTATCTTATCAA
CATGCTAGGATCTGGGTACTGAACATGGGCTGTGTACTTTCTACCC
FMO05660.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-RD | 2233 | CG2217-RD | 387..1444 | 9..1055 | 4910 | 98.3 | Plus |
| CG2217-RC | 1768 | CG2217-RC | 387..1444 | 9..1055 | 4910 | 98.3 | Plus |
| CG2217-RB | 4135 | CG2217-RB | 387..1444 | 9..1055 | 4910 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30421541..30422585 | 1044..9 | 4695 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:13:19 has no hits.
FMO05660.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:38 Download gff for
FMO05660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42740-RB | 387..1452 | 9..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:21 Download gff for
FMO05660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-RA | 387..1452 | 9..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:39 Download gff for
FMO05660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-RB | 387..1452 | 9..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:39 Download gff for
FMO05660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30421547..30422585 | 9..1038 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:38 Download gff for
FMO05660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26247269..26248307 | 9..1038 | 98 | | Minus |
