FMO05661.5prime Sequence
941 bp (941 high quality bases) assembled on 2008-08-25
> FMO05661.5prime
CAGTCGACATGGCATTCTCCATCGTGAGCCGTGGTATTTTGCGCACTTCA
AGAGAAATTCTGGAACGCAACATGGCCGCAACTGTCGGCGTTCTGCAGCA
GAATGCCTCCCCGCCCCCAAACACGCCCATTTCGCACAGCGATTGTCACC
GCCTGGCATCTGGCGGCATTATCTGTGGACATGGAGCACATTCACTGCTT
TGGCATCAAATGCCAACTGCCGTGGTCCAGGCTGTCCGTCAATATTCAAA
GAAGGCCGGAGCGGCCAAATTGCGACGGGAGGTGGAAAGTGATAGCGATT
CCGACTCGGATGATGAGTTCGAGCGTCGTCGCCAGAAAATGGATTCCAAG
CGCAGCGAACGGGGCGACTCAGCATTCTGGCGCCGCAAAATGCGTACTCT
CCACCGCATTTTGGACGTTAATCACGACGGCGTCGTGTCCTTCGACGACT
TTAGTTTGCTGGCCAAACGCTTTAGCGATCTGGGCCATTTGACCCCAGAG
GTCGCTGCCGAATTCAACGATGTGATCAAGCATACTTGGGAAGAGCAGTT
CGGGGAGATAACCCCATACAATCTGGTAACTGCCGAGCAGTTCCTCACCG
ATCTGCACCATCGTCTCAACGACAAGAAGATGGCCAAACGCATCGGTCGC
TTCCTGCCCTACTTGTTTAAGGCTGTGGACTTTGATCACACTGGCCATTT
GGATCTCGAACAATACAAGCTCTTCTTCCGTTGTCTGGGACTGACCGAAG
ACGATGCTGCCGTTTCATTCGCTGTGAATAGACAAGAACGGCGATGGCCA
ATTGTCGCTCAGGAGTTTGTGCATTTGGGCCGTCAGTCTTTTTAACCGAG
GACGACTCGAAGATATCGAAAATGTTCTTGGGAACGCTGGTCGCTGATCA
TGCAAGCTTTCAGACCATTCGTTGGCGCGGCGGGCCCAGGT
FMO05661.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CBP-RC | 2185 | CG1435-RC | 365..1258 | 9..901 | 4370 | 99.4 | Plus |
| CBP-RA | 2185 | CG1435-RA | 365..1258 | 9..901 | 4370 | 99.4 | Plus |
| CBP-RB | 2225 | CG1435-RB | 546..1298 | 150..901 | 3665 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7341194..7341504 | 362..672 | 1555 | 100 | Plus |
| X | 23542271 | X | 7340300..7340517 | 146..363 | 1075 | 99.5 | Plus |
| X | 23542271 | X | 7341572..7341804 | 670..901 | 990 | 97.9 | Plus |
| X | 23542271 | X | 7337716..7337856 | 9..149 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:50:03 has no hits.
FMO05661.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:40 Download gff for
FMO05661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CBP-RA | 365..1258 | 9..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:38 Download gff for
FMO05661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CBP-RA | 347..1240 | 9..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:25 Download gff for
FMO05661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CBP-RA | 365..1258 | 9..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:25 Download gff for
FMO05661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7337716..7337856 | 9..149 | 100 | -> | Plus |
| X | 7340304..7340516 | 150..362 | 100 | -> | Plus |
| X | 7341195..7341503 | 363..671 | 100 | -> | Plus |
| X | 7341574..7341804 | 672..901 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:40 Download gff for
FMO05661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7231749..7231889 | 9..149 | 100 | -> | Plus |
| arm_X | 7234337..7234549 | 150..362 | 100 | -> | Plus |
| arm_X | 7235228..7235536 | 363..671 | 100 | -> | Plus |
| arm_X | 7235607..7235837 | 672..901 | 97 | | Plus |
