FMO05662.5prime Sequence
1154 bp (950 high quality bases) assembled on 2008-08-25
> FMO05662.5prime
CAGTCGACATGTACCTCTTCACCAAGGCGAATCTCATACGCTTCCTAGCC
GGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCTTCCGTTCCGA
CGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGGCGCGTGCACA
AGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGCCGGAGGCAGT
GAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAAAAGACAGAGA
GCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATAAGAACTGTGA
TTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAACGCGCTTCCTG
CTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCACATCCGCCCT
CCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGACCCATCACGC
CCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGAGCTTGGACCT
CTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCAATGCCCAGCA
TCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCCCATCTATTAC
TTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCGCATCGCCTAT
CGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTAATCGGGCTGC
CATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTACCAGTGGGATT
GTTTTATATTCCACGATGTCGATCTTCTGCCTTTGGACGACCGCAATCTT
TACACTGTCCACGTCAGCCGCGACACATGTCAGTGGCTATAGACACGCTG
AACTTCAGTTGCCTTATCGATCATATTTGGAGTTGTTTCCGCATGACGCG
TGAGCCACTTTCAAGCGTAATTGGTTCTCAACTCGTTCTTTGCTGGGGCG
GCGAGATGACGACTGTCACAGTGAGCACGCAAACTATCTATCAAGTATTC
GTCAACTAGCTCGCTAAGATGCTGAGCATCGAAGGAAAGCATCTAGCGCT
ATGAACTACGATGCATGACCAAATGAACGATGATCACCGAAGATTCTATC
CACGCCCCACTCATCATGCTTCGACTAGATCCGAGCCAAGTCAGCTTTGA
ACGT
FMO05662.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalNAcTA-RA | 1867 | CG8536-RA | 134..1188 | 8..1038 | 4600 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14259715..14260139 | 435..858 | 2075 | 99.8 | Plus |
| 2R | 25286936 | 2R | 14259355..14259660 | 132..437 | 1530 | 100 | Plus |
| 2R | 25286936 | 2R | 14259163..14259288 | 8..133 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:13:56 has no hits.
FMO05662.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:07 Download gff for
FMO05662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTA-RA | 126..1138 | 1..995 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:39 Download gff for
FMO05662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTA-RA | 124..1136 | 1..995 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:01 Download gff for
FMO05662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTA-RA | 126..1138 | 1..995 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:01 Download gff for
FMO05662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14259155..14259288 | 1..133 | 97 | -> | Plus |
| 2R | 14259357..14259658 | 134..435 | 100 | -> | Plus |
| 2R | 14259716..14260138 | 436..857 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:07 Download gff for
FMO05662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10146660..10146793 | 1..133 | 97 | -> | Plus |
| arm_2R | 10146862..10147163 | 134..435 | 100 | -> | Plus |
| arm_2R | 10147221..10147643 | 436..857 | 99 | -> | Plus |
