FMO05664.5prime Sequence
1226 bp (1017 high quality bases) assembled on 2008-08-25
> FMO05664.5prime
CAGTCGACATGGGTACCAAAAGACCCAATAATAGCGTAATTTTGGCCCAA
GAGGCAAAGCGTAGCAAAAATGATCTGATGGCCTACACAAACAGGGACAA
AGCGCTCCTTGAATCGGGAGTGAGGCGTACCTCAAACCTGCAGGCGCCCA
TAATGCAATTAGAAGGACATGAGGGAGAGATTTTCACAGCGGAATTCCAT
CCCGAGGGGGAGTTATTGCTTTCTTCTGGGTTCGATAGGCAAATCTACAT
CTGGCAAGTGTACGAAGACTGCGAGAATGTGATGGCCATGTCGGGACACA
GCGGTGCTGTTATGGAAGCTCACTTTACGCCGGATGGATCGCACATTTTT
ACCTGCTCCACTGATAAAACTCTGGCCTTTTGGGACATAGCCACGGGCCA
GCGGCAACGGCGGTTCAAGGGGCATGGCAACTTCGTGAACAGCGTTCAGG
GCTCGCGTAGGGGTCAACAGCTCCTCTGCTCGGGAAGCGATGATCGCACC
ATAAAAATCTGGGACGCCAGGAAAAAACACGCGGCACACACTTTGGAATC
CCCTTTTCAAGTCACAGCTGTTTGTTTTGGTGACACTGGAGAACAAGTAA
TTAGCGGCGGGATCGACAACGAAGTCAAAATCTGGGACATTCGAAAACAG
GCTGTCTTGCACCATCTGCGAGGGCATTCGGATACGATTACCGGAATGTC
CTTGTCCCCCGAAGGAGACTTTATCTTGACAAATGCCATGGATAACACCT
TGAGGGTGTGGGACGTGAGACCTTATGCACCCGGGGAAAGATGTGTGAAG
GTATTCCAAGGCCATCAGCACAATTTTGAGAGAATCTGCTGAGATGCGCT
TGGTCGCCGGGAAGCGATAAAATAACATCGGGTTCCGCCGATCGGCATGT
CTATATTTGGGATGTAAATACAAGAGAATTCTTTACAAGCTGCCCGGACA
CAATGGCAGTGTCAATGCCGTGATTTCAGCCAAAGACCCTGATTCTATCT
GATCAGCGATAGACTTGTATCTGGGAAATCGATGAGCAGCTTTCTAGACA
TCGTGGCCGCGGCCAGTATGGTCTATCATATCTATCTAACTATCCACTAG
CCTAAGGAGATCTGCCTGGACTATGCTGATTCTCACAATAAAACGTCGAG
ACGAGCCTGACATTCCAGTGATCTGAGCTTACTGAATCTTCACAGGAGAT
CGACGCAGAGCTATATCATACAATAG
FMO05664.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3436-RC | 1381 | CG3436-RC | 213..1252 | 9..1035 | 4895 | 98.8 | Plus |
| CG3436-RA | 1261 | CG3436-RA | 93..1132 | 9..1035 | 4895 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 156736..157463 | 247..972 | 3540 | 99.7 | Plus |
| 2L | 23513712 | 2L | 156422..156552 | 116..246 | 655 | 100 | Plus |
| 2L | 23513712 | 2L | 156241..156349 | 9..117 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:42:02 has no hits.
FMO05664.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:39 Download gff for
FMO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3436-RA | 93..1132 | 9..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:43 Download gff for
FMO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3436-RA | 213..1252 | 9..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:29 Download gff for
FMO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3436-RA | 93..1132 | 9..1035 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:29 Download gff for
FMO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 156241..156348 | 9..116 | 100 | -> | Plus |
| 2L | 156423..156552 | 117..246 | 100 | -> | Plus |
| 2L | 156736..157537 | 247..1035 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:39 Download gff for
FMO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 156241..156348 | 9..116 | 100 | -> | Plus |
| arm_2L | 156423..156552 | 117..246 | 100 | -> | Plus |
| arm_2L | 156736..157537 | 247..1035 | 98 | | Plus |
