FMO05666.5prime Sequence
909 bp (909 high quality bases) assembled on 2008-08-25
> FMO05666.5prime
CAGTCGACATGAACCAAAATCTCTTGTTTGTATTTTTGCTCTGCGCCGCG
CAGGGCCAGGCGGAACTCTCCGGATTACTAAGTGCCCTCCAGTATTTCGG
GCTCTTCTCAAATTTGACGGTGTATTCCCTGGGAGTTTCGCGGGGCCAGT
GCCATTATAGCTTCGAAACCTTGCTGAAGGAGCGACACACATGTGCCCCG
GATGACGAGCACATCATGCACCTAAACCAGCTGCCTCCGGTTCGAAAGCC
ACCTATTATGATGAAGTGCCTGCAGCGGGATATCGAGAATGAGACAGCAT
CCGAGCCGGAACTGCTGATAATGCGCAGTGCCAAGGATATAGTGAATCTG
CTTAAGCCCATGGGCAATGCCACCAAGCGCCACGAGCCGGGCAACTGTGT
GCTTGTCCATTTCTGCACCGCATCCAGCTTGGAGTGCGCTCGTGTGGCTT
CGATGGTCAACGTGCTGCCCCATTACTTTCCCACGCTACCCATCGCCTAT
GTGGATGCCTATGAGTTTGGTCGTTTCAATGCAGAATTCGGCATCGTTTC
GCTGCCCACACTGATGCTATTCCACCAGGGCAGGCCGCTAATCAAATTCG
AGCCCGGGTGGAAGGACACAAAGAGCAGCTTTGCCAGTTTCATAATGAGT
CACACCAATATGAAGACTGTGAATCCGCAGGCCATTGATCCGATCATCCT
CACTCGCGCAGAGATGGAGCCGCTGTCTAATAAACCCATTGTGCAGACGG
ATTACTATTTGGGCCTGGCTTGGGCCTTTATTCTCGTCTGCCTTGCCAAC
TTCCTGCGTAAGACGGCGCTCTGGAGCAGCTGGTAGAGATGGTGCAGCGC
ATTTGGCGGGAATCCGAGGAGACGCAATGGAGATGGTGGACGCAAGCTTT
CTAGACCAT
FMO05666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-RA | 1057 | CG8297-RA | 72..956 | 9..891 | 4360 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15934981..15935837 | 37..891 | 4170 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 22:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 202..272 | 752..683 | 109 | 63.4 | Minus |
| Tabor | 7345 | Tabor TABOR 7345bp | 7041..7111 | 752..683 | 109 | 63.4 | Minus |
FMO05666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:09 Download gff for
FMO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 72..961 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:45 Download gff for
FMO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 9..898 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:53 Download gff for
FMO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 72..961 | 9..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:53 Download gff for
FMO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15934896..15934923 | 9..36 | 100 | -> | Plus |
| 2R | 15934981..15935842 | 37..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:09 Download gff for
FMO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11822401..11822428 | 9..36 | 100 | -> | Plus |
| arm_2R | 11822486..11823347 | 37..899 | 99 | | Plus |
