FMO05667.5prime Sequence
641 bp (641 high quality bases) assembled on 2008-08-25
> FMO05667.5prime
CAGTCGACATGACTGGTTTAACGAACAGGACCGTTGTTATTGATGGTCGC
GGCCATTTGCTCGGTCGCCTGGCCTCCGTGGTGGCCAAGTACCTGTTGCA
GGGCGGCAAGGTGGCCGTGGTCCGCTGCGAGGAGCTGAACCTCTCGGGAC
ACTTCTACAGGAACAAGATCAAGTTCCTGGCCTACCTGCGCAAGCGGTGC
AACGTGAACCCAGCCCGTGGTCCATTCCACTTCCGTGCCCCCTCTCGCAT
CTTCTACAAGGCAGTCCGAGGCATGATCCCACACAAGACCAAGCGTGGCC
AGGCCGCCCTCGCCCGTCTGCGTGTGTTCGACGGCATCCCATCGCCCTAC
GACAAGCGTCGCCGCGTCGTCGTGCCCATCGCTATGCGTGTGCTGACCCT
GCGCTCCGACCGCAAGTACTGCCAGGTGGGTCGCCTGTCGCACGAGGTCG
GATGGCACTACCAGGACGTGATCAAGAGCCTGGAGCGCAAGCGCAAGGCC
AAGCTCCGTGTCACCCTCAAGCACAACCGCGAGCTGAAGAAGCTGACGGT
CAAGGCGCGCGAGAACATCGCGAAGGCCGCCGAGCCCTTCAACAAAATCA
TCAAATCCTACGGCTACGAGGTTGCAAGCTTTCTAGACCAT
FMO05667.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL13A-RB | 722 | CG1475-RB | 27..641 | 9..623 | 3045 | 99.7 | Plus |
| RpL13A-RC | 903 | CG1475-RC | 468..822 | 269..623 | 1745 | 99.4 | Plus |
| RpL13A-RC | 903 | CG1475-RC | 27..289 | 9..271 | 1315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5625512..5625866 | 269..623 | 1745 | 99.4 | Plus |
| 3R | 32079331 | 3R | 5624889..5625131 | 29..271 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:28 has no hits.
FMO05667.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:16 Download gff for
FMO05667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL13A-RB | 20..645 | 1..628 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:47 Download gff for
FMO05667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL13A-RB | 30..655 | 1..628 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:11 Download gff for
FMO05667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL13A-RB | 20..645 | 1..628 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:11 Download gff for
FMO05667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5625514..5625870 | 271..628 | 98 | | Plus |
| 3R | 5624890..5625130 | 30..270 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:16 Download gff for
FMO05667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1450612..1450852 | 30..270 | 100 | -> | Plus |
| arm_3R | 1451236..1451592 | 271..628 | 98 | | Plus |
