FMO05670.5prime Sequence
960 bp (960 high quality bases) assembled on 2008-08-25
> FMO05670.5prime
CAGTCGACATGGCAGCGACATTGCGAAGATTCCATGGCTTGAGATTGCTG
AAATCCGCGCCAGCACTCAGCCTGCAGCAGGCGAAGAACCTCTCTTCCGC
CGGCAGCTGGGCCAGTGGCAACAAGAAGCTGATCGGCGCCTTGGGAGCAA
TCACCGGCGGAGTGGGCGCCCTTATCTACGCCCTGGAGCAGTCCGTGCAG
GCATCTGGCGGCGAGGTGCACTCCCCCGCGCAACTCTGGAACCACAAGGG
CCTCTTCGACGCTTTGGACCACCAGAGCGTTCGTCGCGGCTACGAGGTGT
ACAAGCAGGTGTGCTCCGCCTGCCACTCGATGCAATACATTGCCTACCGC
AATCTGGTTGGTGTCACCCACACCGAAGCCGAGGCCAAGGCTGAAGCCGA
GCAGATCACGGTCAAGGACGGTCCCGATGACACCGGCAACTACTACACTC
GTCCTGGCAAGCTGTCGGACTACTTCCCATCGCCGTATCCCAACGAGGAA
GCGGCCCGTGCTGCCAACAACGGTGCTTATCCTCCGGATCTGAGCTACAT
CGTGTCGGCCCGCAAGGGCGGAGAGGATTACATCTTCTCGCTGCTCACGG
GCTACCATGATGCTCCTGCCGGAGTGGTGCTGCGCGAGGGTCAGTACTTC
AACCCGTACTTCCCGGGCGGTGCCATTTCCATGGCCCAGGTGTTGTACAA
CGAGGTCATCGAGTACGAGGACGGCACACCGCCGACGCAGAGCCAGCTGG
CCAAAGGACGTGGCCACTTTCCTGAAGTGGACTTCCGAGCCGGAGCACGA
CGATCGCAAGCAGCTGCTGATCAAGGTGATTGGCATCCTTGGGCTTCCTG
ACCGTCATCTCGTATTACATTAAGCGGCACAGTGGTCGTCGCTCAAGTCG
CGGAAGATTGTGTTCGTGCCCAAGGAGAAGCAAGCTTTCTAGACCATTCG
TTTGGCGCGC
FMO05670.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4769-RB | 1145 | CG4769-RB | 129..1050 | 8..930 | 4455 | 99 | Plus |
| CG4769-RA | 1521 | CG4769-RA | 129..1050 | 8..930 | 4455 | 99 | Plus |
| CG14508-RA | 1293 | CG14508-RA | 454..924 | 236..706 | 675 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5361694..5361990 | 410..706 | 1425 | 98.7 | Plus |
| 3L | 28110227 | 3L | 5362101..5362327 | 703..930 | 995 | 98.7 | Plus |
| 3L | 28110227 | 3L | 5360875..5361025 | 127..277 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 5361491..5361627 | 276..412 | 670 | 99.3 | Plus |
| 3R | 32079331 | 3R | 29203044..29203499 | 691..236 | 660 | 76.3 | Minus |
| 3L | 28110227 | 3L | 5360339..5360412 | 8..81 | 370 | 100 | Plus |
| 3L | 28110227 | 3L | 5360688..5360739 | 77..128 | 245 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-28 20:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4184..4248 | 131..200 | 114 | 65.7 | Plus |
FMO05670.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:12 Download gff for
FMO05670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4769-RA | 121..1050 | 1..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:34 Download gff for
FMO05670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4769-RA | 142..1071 | 1..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:04 Download gff for
FMO05670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4769-RA | 121..1050 | 1..930 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:04 Download gff for
FMO05670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5360331..5360411 | 1..80 | 95 | -> | Plus |
| 3L | 5360692..5360739 | 81..128 | 97 | -> | Plus |
| 3L | 5360877..5361025 | 129..277 | 100 | -> | Plus |
| 3L | 5361493..5361625 | 278..410 | 99 | -> | Plus |
| 3L | 5361695..5361988 | 411..704 | 98 | -> | Plus |
| 3L | 5362103..5362327 | 705..930 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:12 Download gff for
FMO05670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5353431..5353511 | 1..80 | 95 | -> | Plus |
| arm_3L | 5353792..5353839 | 81..128 | 97 | -> | Plus |
| arm_3L | 5353977..5354125 | 129..277 | 100 | -> | Plus |
| arm_3L | 5354593..5354725 | 278..410 | 99 | -> | Plus |
| arm_3L | 5354795..5355088 | 411..704 | 98 | -> | Plus |
| arm_3L | 5355203..5355427 | 705..930 | 98 | | Plus |
