FMO05676.5prime Sequence
892 bp (892 high quality bases) assembled on 2008-08-25
> FMO05676.5prime
CAGTCGACATGGGCAATACAGCCATCACCCGAGTGCAAATGGAGGCCACG
AAGAGTGTGCCGGTGGACCACGCCAAGTACATGAGCGGCAGTGGTGCCCC
GCCACCAGAATGCCCCATGCATCAGAAGCATGGAGATGCAAAATCGGCCT
CCGCCGTACCCCCACATCCCAAGATGCAGGCCGCTTCCGAATGTCCGGTG
CAGCACGACAACAGCGACGTTAATCCGCTGAATATGATGCCACCGGCAAA
CCAACAGCCGGCGGCAGATCAGCCCTTTCCACTGCCCACCGACCGCCAGA
CGTCGACCATTCCCAAAGTCACCGAGGATGGCAGCGTTCAATTCTGGCAG
TATCCCAGCCAACAGATGTTCTGGAACGCCATGCTACGCAAGGGCTGGCG
CTGGAAGACCGAGGACGTATCGCAAAAGGACATGGGCGACATCATACGCA
TCCACAATGCCAACAACGAGCAGGCCTGGCAGGAGGTACTTAAGTGGGAG
GCGCTTCACGCCAAGGAATGCGGCAATCCGCGCCTCAAGAGTTTCGGTGG
CAAGGCCAAGGACTTCAGTCCGCGCGCTCGATTCCGCAGCTGGCTGGGAT
ACGAGCTGCCATTCGATAGGCATGACTGGATAGTCGATCGCTGCGGCAAG
GATGTGCGCTACGTCATCGACTACTACGACGGTGGACTGGTGGACAAAGA
CTACCGCTTTGCCCTGCTGGATGTGCGCCCAGCCATGGACTCCGTGGACA
ACGTTTGGGACAGAATGCGCGTAGCTTACATGCGCTGGAAGTACGAGCTG
TTTGAGAAGTTTGGCAGCGCGGATGGCGGCAAAGTGACCGCTGGTAGCGA
CGCAGCTTTCTAGACCATTCGTTTGGCGCCGCGGGCCCAGGT
FMO05676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cchl-RB | 1190 | CG6022-RB | 185..1027 | 9..851 | 4215 | 100 | Plus |
| Cchl-RA | 1356 | CG6022-RA | 351..1193 | 9..851 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22026448..22027037 | 598..9 | 2950 | 100 | Minus |
| 3R | 32079331 | 3R | 22026138..22026391 | 851..598 | 1270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:59 has no hits.
FMO05676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:42 Download gff for
FMO05676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 343..1196 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:56 Download gff for
FMO05676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 339..1192 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:15 Download gff for
FMO05676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 343..1196 | 1..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:15 Download gff for
FMO05676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22026135..22026390 | 599..855 | 99 | <- | Minus |
| 3R | 22026448..22027045 | 1..598 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:42 Download gff for
FMO05676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17851857..17852112 | 599..855 | 99 | <- | Minus |
| arm_3R | 17852170..17852767 | 1..598 | 99 | | Minus |
