FMO05678.5prime Sequence
773 bp (773 high quality bases) assembled on 2008-08-25
> FMO05678.5prime
CAGTCGACATGGCCGATGAAGCACAAGCACCACCAGCTGAGGGAGCACCA
CCAGCCGAGGGAGAGGCGCCACCACCCGCCGAGGGAGCCGAGGGTGCCGT
CGAGGGCGGAGAGGCCGCTCCACCAGCAGAGCCCGCCGAGCCCATCAAGC
ACAGCTACACGCTCTTCTACTTCAACGTGAAGGCGTTGGCCGAGCCCCTG
CGCTACCTGTTCGCCTACGGCAACCAGGAGTACGAGGATGTGCGCGTCAC
CCGCGACGAGTGGCCAGCCCTGAAGCCCACCATGCCCATGGGACAGATGC
CCGTGCTGGAGGTGGACGGCAAGCGTGTGCACCAGAGCATTTCGATGGCT
CGATTCCTGGCCAAGACTGTCGGCCTGTGCGGCGCTACTCCGTGGGAGGA
TCTGCAGATCGACATTGTCGTTGACACCATCAATGACTTCCGTCTAAAAA
TTGCAGTCGTCTCGTACGAGCCGGAGGACGAGATTAAAGAGAAGAAGTTG
GTCACCCTGAATGCGGAGGTCATTCCATTCTACCTGGAGAAGCTCGAGCA
GACCGTCAAGGACAACGATGGTCACCTGGCTCTGGGCAAGCTGACCTGGG
CCGACGTCTACTTCGCAGGCATCACCGACTACATGAACTACATGGTCAAG
CGCGATCTGTTGGAACCCTACCCAGCTCTGCGCGGAGTCGTGGATGCCGT
CAACGCTTTGGAACCGATCAAGGCCTGCATCGAGAAGCGCCCCGTCACCG
AGGTCGCAAGCTTTCTAGACCAT
FMO05678.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstS1-RC | 1461 | CG8938-RC | 525..1271 | 9..755 | 3720 | 99.9 | Plus |
| GstS1-RB | 1402 | CG8938-RB | 235..981 | 9..755 | 3720 | 99.9 | Plus |
| GstS1-RA | 1764 | CG8938-RA | 200..946 | 9..755 | 3720 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17094765..17095035 | 279..9 | 1355 | 100 | Minus |
| 2R | 25286936 | 2R | 17094529..17094696 | 447..280 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 17094064..17094230 | 755..589 | 820 | 99.4 | Minus |
| 2R | 25286936 | 2R | 17094316..17094458 | 590..448 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:06:00 has no hits.
FMO05678.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:11 Download gff for
FMO05678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstS1-RA | 193..952 | 1..763 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:59 Download gff for
FMO05678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstS1-RC | 222..981 | 1..763 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:57 Download gff for
FMO05678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstS1-RA | 193..952 | 1..763 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:57 Download gff for
FMO05678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17094058..17094228 | 591..763 | 97 | <- | Minus |
| 2R | 17094316..17094458 | 448..590 | 100 | <- | Minus |
| 2R | 17094529..17094696 | 280..447 | 100 | <- | Minus |
| 2R | 17094765..17095040 | 1..279 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:11 Download gff for
FMO05678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12982034..12982201 | 280..447 | 100 | <- | Minus |
| arm_2R | 12981563..12981733 | 591..763 | 97 | <- | Minus |
| arm_2R | 12981821..12981963 | 448..590 | 100 | <- | Minus |
| arm_2R | 12982270..12982545 | 1..279 | 98 | | Minus |
