FMO05681.5prime Sequence
1233 bp (939 high quality bases) assembled on 2008-08-25
> FMO05681.5prime
CAGTCGACATGCTCAAGTGGGCCGTCAACCAGCCACGACCCTCGTACTTG
GCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGCTCCAGCTA
CAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTCGATCGGAG
TGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGCCGGCCAGC
TCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTCAGCAACAT
CCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGGGGCAACTG
GAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGCCCACCTTC
GAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCCCTGATCGC
CCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCCGCGTTACC
TGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCACCTCCGACC
GGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTGACCCTGGA
GCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCTGCCCAACG
CCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGCAGCATCTC
CGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGCCACGGACA
CGGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCCCGCCTTCG
ATCCGGCCAGCGATCTGTGCGAGTACTGGAAGTCGCCCTCGCGGAGGGAT
TCCCTGCCAGCGGAGGGCTTCGAGGAGCGGGAGGTGCGCTCACCCCGTGC
CCACCGTATCCGAATCGCAAGATGCCAAGCGGCATTCCCTGCAGCTGCGC
CGGCAGTGGGGTGGTGCGGGCGCAAGCGAAGATCACACAAAGACTTCCTC
CGCGTCAGGCAGTCGCCGCAAGCTGCTTGCAGCGGCCAGGTCCGGATCCA
TAGCAGCCTCCCGCCCAGAAGAATGCCCCACATCAGTCCGGACAGTGGGC
AAATTCCACCAACGAACTGCCAGCTGGAGGAGGAAGCACTGCAACTGATC
CCGGAACTGGGATTGGGTGCCAGAGGACTGGAAGATGCCTGGTCACCTGG
GATGCTGTGGTTGCAGTCCAGCAAAACTCCCAAAACTTCACTCTTCTGGT
GAAAAAGAACGCCGAGCTCTTCCTACAACCCAG
FMO05681.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12708-RB | 1702 | CG12708-RB | 372..1528 | 9..1165 | 5070 | 96.7 | Plus |
| CG12708-RA | 1586 | CG12708-RA | 256..1412 | 9..1165 | 5070 | 96.7 | Plus |
| CG15646-RB | 1697 | CG15646-RB | 414..1411 | 90..1065 | 3955 | 93.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15676407..15677482 | 9..1084 | 4710 | 98.1 | Plus |
| X | 23542271 | X | 15668246..15669168 | 998..90 | 3715 | 95.7 | Minus |
Blast to na_te.dros performed 2014-11-28 18:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6893 | 596..695 | 148 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6851 | 562..692 | 146 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6827 | 596..695 | 141 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 596..681 | 139 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2383 | 595..661 | 134 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6889 | 576..677 | 134 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2416 | 553..661 | 120 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2482 | 605..706 | 113 | 59.2 | Plus |
FMO05681.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:41 Download gff for
FMO05681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12708-RA | 226..1328 | 2..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:03 Download gff for
FMO05681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12708-RB | 245..1347 | 2..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:31 Download gff for
FMO05681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12708-RA | 251..1353 | 2..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:31 Download gff for
FMO05681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15676402..15677504 | 2..1105 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:41 Download gff for
FMO05681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15570435..15571537 | 2..1105 | 97 | | Plus |
