FMO05682.5prime Sequence
770 bp (770 high quality bases) assembled on 2008-08-25
> FMO05682.5prime
CAGTCGACATGCTCTCATTAAAGTTAGTCTCCCAGCTCTTTAAGCAAAGC
CTTGCGTCGGGCAACATGGCAATTGTCAACACAGCCGGTCTTAAGTATTT
CGCTCCGCCTATTAAATACCAGAATGTGGAGCAGCCGGAGAGACCCAAGC
TGAGGGTCATTGAGCGCCAGCCCCAGCTGCCGCCAAACATCCGTCCGCCA
AAGATGCAGAAGCGCCTGCGATACATGCGCGGTCCGGAGATGGTGCACAA
CACGCTGCTCCATAAGCAGTACGCAATCGTGGCCACTGGCGGAGGGCGCC
TGCGCTGGGGCCACTACGAAATGATGCGTTTGACCATCGGACGCAAGATG
AACGTCAACACTATGTTCGCCACATGGCGCGTTCCCGCACCCTGGCAGCC
GATCACTAAGAAGGGCCAGGGCCAACGGATGGGCGGCGGAAAGGGAGCCA
TCGACCACTACGTGACCCCCATCAAGGCCGGTCGCGTCATTGTCGAGATA
GCCGGCAAGTGCGAGTTCGTTGAGGTCAAGCAGTTCCTGCAGCAGGTGGC
CAACCAGCTGCCCTTCCAGGCCACCGTCGTTTCCCAGGAGATGCTCGACG
AACAGCGCGTCGCCGAGGAGGAACAGACCCGCCAGAATGAGAACCCCTTT
ACCATGAAGTACGTGATCCAGAACAACCTCAGCGGCTGCCACCGTTGGCT
CTCGCCCGTGGACCACAAGTGGTTCGGCAAGCACCTGGGCAAGCTTTCTA
GACCATTCGTGTGGCGCGCG
FMO05682.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL16-RB | 1076 | CG3109-RB | 91..820 | 8..737 | 3650 | 100 | Plus |
| mRpL16-RA | 869 | CG3109-RA | 91..820 | 8..737 | 3650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1890613..1891226 | 124..737 | 3070 | 100 | Plus |
| X | 23542271 | X | 1890478..1890543 | 58..123 | 330 | 100 | Plus |
| X | 23542271 | X | 1890346..1890395 | 8..57 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:50:13 has no hits.
FMO05682.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:46 Download gff for
FMO05682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL16-RA | 84..820 | 1..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:34:50 Download gff for
FMO05682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL16-RA | 41..777 | 1..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:33 Download gff for
FMO05682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL16-RA | 84..820 | 1..737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:33 Download gff for
FMO05682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1890339..1890395 | 1..57 | 92 | -> | Plus |
| X | 1890478..1890543 | 58..123 | 100 | -> | Plus |
| X | 1890613..1891226 | 124..737 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:46 Download gff for
FMO05682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1784372..1784428 | 1..57 | 92 | -> | Plus |
| arm_X | 1784511..1784576 | 58..123 | 100 | -> | Plus |
| arm_X | 1784646..1785259 | 124..737 | 100 | | Plus |
