FMO05686.5prime Sequence
1233 bp (974 high quality bases) assembled on 2008-08-25
> FMO05686.5prime
CAGTCGACATGGCCCTGACGTCGCGCTTCTACAACGAGCGGTATCCGGAG
ATCGAGGATGTCGTTATGGTGAACGTGCTGTCCATCGCCGAGATGGGCGC
CTACGTTCATCTGCTTGAGTACAACAACATCGAGGGCATGATCCTGCTGT
CGGAGCTGTCCCGCCGGCGCATCCGCTCCATCAACAAGCTGATTCGTGTC
GGCAAGACCGAACCGGTGGTGGTTATCCGTGTTGACAAGGAGAAGGGCTA
CATCGATCTGTCGAAGCGTCGCGTTTCGCCCGAAGATGTCGAGAAGTGCA
CCGAGCGCTTCGCTAAGGCCAAGGCCATCAACTCACTGCTCCGCCATGTC
GCCGACATACTCGGCTTCGAGGGCAACGAGAAGCTGGAAGATCTCTACCA
GAAGACCGCCTGGCACTTCGAGAAGAAGTACAACAACAAGACGGTCGCCT
ACGACATCTTCAAGCAATCGGTCACCGATCCCACCGTCTTCGATGAGTGC
AACCTGGAACCGGAGACCAAGGAGGTCCTGTTGAGCAACATCAAGCGGAA
GCTGGTCTCGCCCACTGTCAAGATCCGTGCGGACATCGAGTGCTCCTGCT
ACGGTTACGAGGGCATCGACGCTGTCAAGGCATCGCTCACCAAGGGCCTG
GAGCTGAGCACCGAGGAGCTGCCCATTCGCATCAACCTGATAGCACCGCC
ACTCTATGTAATGACCACATCCACTACCAAGAAGACAGACGGTTTAAAGG
CTCTGGAGGTGGCCATTGAGCACATTCGCGCCAAGACCAGCGAGTACGAT
GGGAGAGTTCAAGGTGATCATGGCACCCAAACTGTTACGGCCATCAACGA
GGCGGATCTGGCCAGACGCCTGGAGCGCCGCTGAGGCCGAGAAGCCAGGT
GGCTGGCGACGATGACGAGGAGGATGGCGCCGACCAGGAGGGCCATGCAG
TTCGATCCAGAGAAAGGAGTTCACCACAGGGATCGGGGGGCGGGTCGTTG
CGAACCGAGGAGGATGAGGAGGAGGAGAGGATGCAGCTTTCTAGACATTC
GTTTGGGGCGGCGGGCCAGGTAGGTGTATAATCATATTCATAATCATATT
CATATTCAACAACTAGCCTAGGAGATCTGTCATGACTAGTGGCTTGGAAA
TCTCCACAATAAAGCTGCGCACGAACGTCTGAACAATCCAGATGGATTCT
GAAGAGGCATATAAGTGGGTCATTCATCACAGA
FMO05686.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-2alpha-RB | 1519 | CG9946-RB | 113..1137 | 7..1032 | 4820 | 98.6 | Plus |
| eIF-2alpha-RA | 1200 | CG9946-RA | 113..1137 | 7..1032 | 4820 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16446178..16446881 | 710..7 | 3490 | 99.7 | Minus |
| X | 23542271 | X | 16445565..16445885 | 1026..704 | 1070 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:42 has no hits.
FMO05686.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:24 Download gff for
FMO05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 108..1141 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:09 Download gff for
FMO05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 89..1122 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:39 Download gff for
FMO05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 108..1141 | 1..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:39 Download gff for
FMO05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16445565..16445885 | 704..1026 | 96 | <- | Minus |
| X | 16446185..16446886 | 1..703 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:24 Download gff for
FMO05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16339598..16339918 | 704..1026 | 96 | <- | Minus |
| arm_X | 16340218..16340919 | 1..703 | 99 | | Minus |
