FMO05687.5prime Sequence
665 bp (665 high quality bases) assembled on 2008-08-25
> FMO05687.5prime
CAGTCGACATGGGTTATTCCATTAAGAACTGCGAAACGGGTGAGTTGGAG
TACTTCTACACAGACACCGTCCGCGTTAATAGACCGGCCTTCGATGAGGA
GACCGGTGAACCGATCCACGACCAGGTGACCAAGGTTCACTTCCGCAAAC
ACACGAATTTCCATGTACCCAAGCACTATCTCCGCGGAACCATATGCGAT
GAGGTAGACGACGAGCTGGCCAATACGGTGAGATATGGGGCAGCCACCGC
GATTCCCAACAGGGCACCCAAAAAGGTCACTCCGGGCTACGAACGCGAGG
ACTATTGTCAAATGGATGGCGTGAGCAACAACATAATCCTGGGCTACAAC
CGCAACCCCTACTTGCTGTTCCTGGTGCCCACGCTCTTCTGCTACAACTT
CGTCATTGGAGCCACGCTGGCCCTCATCGAGATCGTCCTGCACATGATGT
CCCACCACAGGAACGGTCTCACCATGCAGAAGAGCCTGTACTTCCGTAGT
CCACTCAACGTGCTGTCCTCGCAGTTCTGCGCCATCTGCCGCACGGAAAC
CGACAGCAAGTACAACCGCATCTTCGATATCCTTAACAAGCAGATGCGCA
ACGCACATCGCTCCGAGGCGCTGAAGGACATGGCCAAGGCAATTGGAGCA
AGCTTTCTAGACCAT
FMO05687.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1927-RA | 1198 | CG1927-RA | 462..1101 | 8..647 | 3200 | 100 | Plus |
| CG1927-RB | 744 | CG1927-RB | 26..647 | 26..647 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1966822..1967139 | 647..330 | 1590 | 100 | Minus |
| 3L | 28110227 | 3L | 1967200..1967504 | 329..25 | 1525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:40 has no hits.
FMO05687.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:20 Download gff for
FMO05687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1927-RA | 455..1107 | 1..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:11 Download gff for
FMO05687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1927-RA | 451..1103 | 1..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:18 Download gff for
FMO05687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1927-RA | 455..1107 | 1..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:18 Download gff for
FMO05687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1966816..1967139 | 330..654 | 99 | <- | Minus |
| 3L | 1967200..1967502 | 27..329 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:20 Download gff for
FMO05687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1966816..1967139 | 330..654 | 99 | <- | Minus |
| arm_3L | 1967200..1967502 | 27..329 | 100 | <- | Minus |
