FMO05694.5prime Sequence
1171 bp (908 high quality bases) assembled on 2008-08-25
> FMO05694.5prime
CAGTCGACATGAAGATATTTGTGACGGTTCTGATGGGCGCCATGTGCCTG
AGCCTCAGCCAGGCTGACATCAGCTTGACCCAGGCGGGTTACAACTACCG
CATCCAACAGCAGCAGCAGCAACAGCAACCGCCCATTGTGGCCCACCTGT
TGAACCAGCAACTGCAGCAGCAGCAGCAGCTCCAGCCCCAGCAATCCTCG
CACCCGGTGCTTCCACCTCTCCCACTGCCCTACCTCCCGCCCGCTGGCCA
GTTCCATTCTGCCCAGCCTGCAGTTCGTCCCACAGCCGGATCGTTTCCCA
TGCCCGCCGGCTTCCCCGTCAATTTCCAGACCGCTCCCATCCAGCAGCAG
CGACGCGCTCGTCCGCGTGTCAGGATTCCCAAGCGTCCCATTGTGACCAA
AAACTTTTTCATCCACTCGGCGCCCGAGGAGTCTGAGGATGAGGTCCAGG
ACGAGCTGAACCAGTTGGCCCAGCAGCCCCGTAACCACTACAATGTGCTG
TTCGTCAAGACGCCGGCTCAGACCAATCGCGCGGCGGCTCTTAACTTGGC
CAAGACCCTTAAGCAGGAGAAGACCGTGGTCTATGTGCTGGCCAAGAAGA
CGACCGCCTCCGATCTGCAGGATGCCATTGCCGAGGCGCCACAGCACATC
AATAAGCCGGAGGTGTTCTTCATCAAGTACCGCACTCCAGAGGAAGCTCT
GAATGCCCAGCGGCAGATTCAGTCACAGTACGATACTTTGGGAGGAAGTT
CGACCATCACCGACGAGGGTGTGGCCCCCATCACCTCGGTGGGTGGGGAT
CCCTGGATCCTTCAGAGGAGGAGGAGGAGGACAGCAACAGCAGCAACATT
CAAAGGGACATTTGCCGGAGACCGGTGCCGGAAACTCTGGCGTCGTCCAA
TCGGCAATCATTATTTGCCCGCGAACCAGTTCGCAGCTTTCTAGAACATT
CGTTGGCGCGCGGTCCAGGTAGTGTCATATTCATATCATATTCATATCAT
ATCACACTAGCTAGAGATCTGTCATGACTATGCTGATCCTCATAAAAACG
CGCGCAACGACGTCTGACATCGATGGATCTTGAGTCTACTGATCATCAAC
GATCAAGCGGCTGAATCATAGCAGACTGCATTATCGAATGTGAATCCTAG
CATCTGCCCAAGGAATCTCTC
FMO05694.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlW-RA | 1126 | CG4060-RA | 92..1016 | 8..932 | 4430 | 98.9 | Plus |
| TwdlQ-RA | 893 | CG14250-RA | 554..679 | 654..779 | 180 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17141318..17142227 | 932..23 | 4275 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-28 23:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6869 | 91..204 | 206 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6892 | 92..194 | 197 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6820 | 81..194 | 190 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6870 | 91..224 | 184 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2526 | 92..225 | 179 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2405 | 95..194 | 173 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1161 | 105..193 | 161 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2560 | 92..213 | 159 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2430 | 92..186 | 157 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2455 | 105..193 | 155 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2888 | 92..194 | 152 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..6946 | 91..224 | 151 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6920 | 91..180 | 147 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2869 | 91..193 | 141 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2682 | 106..196 | 135 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6857..6893 | 92..129 | 124 | 84.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 940..999 | 68..129 | 124 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1542..1581 | 92..132 | 121 | 80.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1108..1148 | 88..129 | 117 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5636..5673 | 91..129 | 111 | 79.5 | Plus |
FMO05694.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:38 Download gff for
FMO05694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlW-RA | 86..1026 | 1..942 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:04 Download gff for
FMO05694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlW-RA | 80..1020 | 1..942 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:34 Download gff for
FMO05694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlW-RA | 86..1026 | 1..942 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:34 Download gff for
FMO05694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17141308..17142226 | 24..942 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:38 Download gff for
FMO05694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12967030..12967948 | 24..942 | 98 | <- | Minus |
