FMO05701.5prime Sequence
1216 bp (802 high quality bases) assembled on 2008-09-02
> FMO05701.5prime
CCTATACGAAGTTATCATCGACATGGGTTCCTCGTCGTCGGGAAAGAAAC
ACAAGAAGGACAAGAAGAACCGTCATCGCTCGCGATCGTCGGAGCGACCG
CGGCGCGTCACAGAGGACGAGGATGTCACACTGGATCTCACCGACGACTC
CTCGTCGCGGCACAGACACCATAAGCACAAGAAGCACAAGGAGCACCGCC
ACAAGCACCACAAGCAAAAGGAGCGCGAGCGCGCGAACGAGGTCATCTCC
CTAGAGGAATCGGACTCGGATAGTTCCGACTGCGTGGAGGTGCCGGTACA
GGCGCAGGTGCAGGCGCAGGCCAAGTTGAGGGACGCCAGAGAATCGTCCA
ATCGTGACAAGGAGCGGGATTCTGGACGCGATCGTGAACTCCTAAGAGAA
AGGGAGCGAGAACGAGATCGTGAGCGGGAGAGGGATCGGGATCGGGAAAA
GGAGCGCGAACGGGAGCGTGAGAAGGAGCGTCTCAGGGAGCGGGAGGAGC
GCGAGAGAGAGCGTGAGAAGGAACGTATCAGAGAACGCGAGAAAGAACGC
CTTAGGGAGCGCGAGAGGGAGCGGGAACGCGAACGTGTACGGGAGCTCAC
AGCTCCTTCCACCACCCCAAATCTCCAAGCATGCCGAATATGAGTCTAGG
CGAGAGCGTGAGATCGAACGGGAACGGGGACGCCCGCAAGCGATCTGGCA
GAGAACGTGAAAGGGAACGTATAGGGAACGGTCCCGATCCCAGTCGCCAG
CATCGTCGTCGCGTAAACCAGCCACTAAGGAACGCGAACCATCGTCTCGT
TCCTTCTCGCAATACCAGAAAACGGAGCCGGCGATGTCCTGTCCATTACG
GAAACCAACCAACTTCCCGCCAAGCTGGGTCTGAACCACTCGTAGTTGAA
TAGTGTCCCAACAAGGCAAGCCCTCGCCTGTAAGCATATTCAAGCGAGAT
CAAAAAACCCATGGCGAGGTCGATCTCTCCTCGTACAGTATGATTGGGCG
AGTCTTGCACAACCGGCGACAATCTAAGGAAAAAGGAGGCAAGAGCTGGC
CGAACTTAACAGCGCAGATACGATTCTAAGTGACGCCCGGCTCGATCAAA
CCTGGGAAGTCTGTATAGAACTGAACATTGTCATGTGACAAAACAGCGTG
TCTAGCCTGGAGCCTGCTTAGGCAAGTGGAGAAACTGATGAGGCCTTTGG
GGTTTCTGATATCTCT
FMO05701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6686-RB | 3169 | CG6686-RB | 95..1126 | 23..1041 | 4505 | 96.9 | Plus |
| CG6686-RA | 3187 | CG6686-RA | 95..1144 | 23..1041 | 4315 | 95.3 | Plus |
| CG6686-RC | 3192 | CG6686-RC | 95..1149 | 23..1041 | 4265 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11986668..11987387 | 987..273 | 2935 | 96.7 | Minus |
| 2L | 23513712 | 2L | 11987694..11987945 | 274..23 | 1245 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:27 has no hits.
FMO05701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:59 Download gff for
FMO05701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6686-RB | 86..1092 | 14..1012 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:15 Download gff for
FMO05701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6686-RB | 82..1088 | 14..1012 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:26 Download gff for
FMO05701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6686-RB | 86..1092 | 14..1012 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:26 Download gff for
FMO05701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11986640..11987387 | 273..1012 | 96 | <- | Minus |
| 2L | 11987696..11987954 | 14..272 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:59 Download gff for
FMO05701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11986640..11987387 | 273..1012 | 96 | <- | Minus |
| arm_2L | 11987696..11987954 | 14..272 | 98 | | Minus |
