FMO05704.5prime Sequence
1253 bp (1054 high quality bases) assembled on 2008-09-02
> FMO05704.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTTGCCCAAAACC
AAAAGGCCAGCTTCCTGGAGCAGACAAAGGCGGCGCGGGAGGAGCGGGCA
CTGGAAAAGCGACGCGAACAGGCGGCCATCCTGCTGCAGTCCACGCTCAA
GGGATATGCGGCGCGTAGGAAGTACCAGAAACGAATCATACTCGATTTCG
ATGCCATGTTCACTGAGAATCATGACGATAAGGATGCGGAACTGGAACTC
GTGGCAAGCAACGTCTATCCGGTGCTTCGTCGCTACCTCACCCAGATCAG
GCTGGACAAGAGCGATGTGCGTGCACGGGAGCGTCTGGAGCGCATCTGCC
GTTACATCATCAAGGCAATGGAGTCGGAGAACACCAAGCTATCCTATGCC
GCCCTCTGTCTTTTTAAGGAACGCAGCCTGCCCTGGATCGCGCACATCAA
GATACTGCTCACGAACTGCCTGACATTGCTGCCGGAGCTGAAGCCGGAAA
ACCATGCCGACAGCTTGTCCCTTGCCCTATTTCTGCACACACTGGTAGTC
TTCACGGCGCCCAAATCCTGGGCGATACTCAGGAATGCCCAGTTTGAGAA
ACTGCAGCCGGCCATGCAAAAAATCTGTTGTAATATTCAAGGTCATCTGG
TGCAGCACGATTTTTACAAAATCATGCGGCTCGTTTTGATACGCGGCACT
GTTCGCGAGGAGTTGTCTGTAAAGCCCGTCACCCTGGTGGCCATCATTAC
ACTTTGCCTTCGTCCCCTGATCGATGGCACTTCAGTCGTAATCTACTGGC
AAAGTTTCTGTCGGAGATTCTGTCTGTGCCCGCTTTAATCTACCATCTGC
AACAGAGTGTACCTCAGTGCCTGGAACAGTTCTCATCGATGGGACTGCTT
AGAAGGCGCTTAGCATTTCGGGGACGTGCAGTGTTCGAGGAGTTCGGCAC
TAGCATGCCGGGCACCAAGTCCCTGGCTTTTCTGGGAACATAGTGAATTT
GTTCATATCGATGGCAAGGGGAGTCCAGGAGTTGGCTATCCACTACTGAC
TGAACCACCAATCGCTGTTGACTATACCACACGTGACCACATAAGGAGTA
TTTACTCAGTGCCGAGCTTAGATGCCACTCTCGGTCGGGAACCTGACAAT
TCGATGTGGCGTGATTAAAGCGTCCCAATTGGGATATAATCCCTGGCGAT
CTAACCGTGTCTGGAGATCTCTTTGAAGAATACATACTTACACTACAAGG
CAG
FMO05704.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5087-RB | 3942 | CG5087-RB | 272..1365 | 35..1111 | 5020 | 98.3 | Plus |
| CG5087-RA | 3945 | CG5087-RA | 272..1365 | 35..1111 | 5020 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8998663..8999152 | 190..679 | 2450 | 100 | Plus |
| 3L | 28110227 | 3L | 8999207..8999597 | 671..1052 | 1475 | 97.2 | Plus |
| 3L | 28110227 | 3L | 8998455..8998609 | 35..189 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:42:13 has no hits.
FMO05704.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:45 Download gff for
FMO05704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5087-RA | 266..1375 | 28..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:16 Download gff for
FMO05704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5087-RA | 264..1373 | 28..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:36 Download gff for
FMO05704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5087-RA | 266..1375 | 28..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:36 Download gff for
FMO05704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8998449..8998609 | 28..189 | 98 | -> | Plus |
| 3L | 8998663..8999152 | 190..679 | 100 | -> | Plus |
| 3L | 8999216..8999596 | 680..1051 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:45 Download gff for
FMO05704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8991549..8991709 | 28..189 | 98 | -> | Plus |
| arm_3L | 8991763..8992252 | 190..679 | 100 | -> | Plus |
| arm_3L | 8992316..8992696 | 680..1051 | 97 | -> | Plus |
