FMO05705.5prime Sequence
1270 bp (1055 high quality bases) assembled on 2008-09-02
> FMO05705.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATGTTTCGG
CTCTTTCGGAGACAACTTTTAGTCCTGCGGAATGGATAAACGCAAACTAC
AAGAAGTTTGTGGAGGAGAATGGTCGCGATGATAGCGAGGCTGCCTCCGC
CTTCATCAGGAGTTACGTGGCCAAGTTGCAGCTGTATATATTCAACGTAA
ACAATGCTGTGGAGGAGTCAAGTCGCCAAGTGGTGGCCAGCATGCCAAGG
ATCGCTAAGGAATCCGCAGCGCTGCAGGCAGATGTACACCGGCTGCAAGA
GAAGATGAGTGCCATGCGATTGGAGGTAGCTGCAGTGCAAAGCGAAACCG
GCGAATGCATGGCCACCTTGGAGCGCTTGAACACCAAAAGCCAAAAGCTC
CAAGTGGCCAAGGAATCGCTACAGGAGTCTGATGGCTGGGGAAACCTACT
AGCTGAACTAGAGGATGGATTTGAACGCAATGATCTAAAGGGAGTCTGTG
ATAAGCTAATAGCCCTGCAAAAGTCCCTGCACGCCCAGGAACAGCTGCCA
GGCCACGCTGAGCGACAGACCCAAGTGGAGGACTTCAAAAACCGCTTGGA
GGCGCTTGCCTCCCCCAGCGTGGTACAGTGCTTTGCTGAAGGCAATACGG
AGCAAGCCCAGCACTTCGTTCAGATCTTCACCAGCATTCAGCGGCTGCCA
CAGCTGCAGCAGTATTACCGAGCTGTGCAAAAAAATTTTTGGCAGCAGCA
ATGGAAGCAAACTCTGGAGTTGCAGGGCACGGAGTCCCAGCCTCAGCAGC
AGCAGTTTCTTACCCTTTACTACGATCAGCTGCTCGAGCACTGCCAGCGC
CAGGTCAAGTGGTGCTCCAACCTTTTCGGCGAGAACTCCCGCAGCCCTTC
CTGGTTATTGCCGAACTATTGCCGGCATTGCAACCCACACGGGATGCCCA
TATTTTGCAGCTTTTGAAGACCTCCAATGAAGATTAGAGATGCTGGCCTT
GTTCGGCAAGGTTAATCACAGTTTGTGCTGCACTTAAACTCCCTTCTTGA
GCATCGCACATAACCTTGTCGAAGAATTGCCATCGCCTGCTCCGGTGGAG
GCGATTCAGTATTCCACAAGTTATCCAACAGTACCCGGCCTGGAGGAACC
CACTATCCCACAGGTGATCGCTTTCTCACAGCACTCCAGCGAGTTGTTGC
ACCTAGGAGTACGGAGCTCTCAAGAGTGCGAAAAGCCGACACAGCGTGTC
CTCTTATACCAAGATGAAAG
FMO05705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog7-RA | 2340 | CG31040-RA | 29..1175 | 37..1171 | 5280 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29931861..29932468 | 1092..489 | 2735 | 98.2 | Minus |
| 3R | 32079331 | 3R | 29932523..29932817 | 491..197 | 1475 | 100 | Minus |
| 3R | 32079331 | 3R | 29932866..29933029 | 200..37 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:59:18 has no hits.
FMO05705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:16 Download gff for
FMO05705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 21..1185 | 28..1180 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:18 Download gff for
FMO05705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 21..1185 | 28..1180 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:09 Download gff for
FMO05705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 21..1185 | 28..1180 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:09 Download gff for
FMO05705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29931813..29932466 | 491..1137 | 97 | <- | Minus |
| 3R | 29932524..29932817 | 197..490 | 100 | <- | Minus |
| 3R | 29932870..29933029 | 37..196 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:16 Download gff for
FMO05705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25757535..25758188 | 491..1137 | 97 | <- | Minus |
| arm_3R | 25758246..25758539 | 197..490 | 100 | <- | Minus |
| arm_3R | 25758592..25758751 | 37..196 | 100 | -> | Minus |
