FMO05706.5prime Sequence
1282 bp (1051 high quality bases) assembled on 2008-09-02
> FMO05706.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGTCCCTACAG
CGTGACTGGCATTTACAGGGTTCCCGGGGATCGGTTTACTGCGCGAGTGA
ACCGGACCCAACTGGTGGAGTCCAGTACGAGTCGGGAGGGTGCCTTCTCC
ACACGAAGACGGCTGAGGGCTCCGGCGGAGGGGCGGGCGTGGACGGGTCC
GGTGGCGGAGTCGGCCTCGAATGCGGCTCCCTGTTCTCGGTGGTATCAGC
GCCGCCGGCTCCACTGCCCGACATCGTTGTGCCCACCGAGATGGATGGCA
AACACATGGAGTCCGCCGCCTTCCGCTCCGGATGCTGTTCACCCAACGCC
TCGCCCATGCGACGACCCGCCACCCTCAGCCTGGACACGCAATGCTGCCC
GAGGACCCTGCACGCCAGCCTGCTGGAGCATCAGATCTCCGAGCTGGAGG
AGGACGACAATGAGAACCTGCTGACCGTGTCCAGCATCACGGCGCGACCG
TTGATTGCCAAATCGCATGAGCTTCGCAGCAGTCGGAAGTCGGGTTCAGG
TTCCGGATCTGGTTTGAATACGGCCCGCAGCAGGTGCGTCCGCCGGGCCA
AGGAGCGCGAGCGGGATCGCGTGACCGTCGCCAGGCGTAGCAAGCAAGTG
GTCAAGGATCGGGACTCCTCAACGACCACAAACGGAGAGCGGTGGTCCGA
ATGTGGAGCCACCGGACGGCGGTTACGGTTGGTTCATCGTCTTTGGGGCC
TTCTCCGTGCAATTCTGGGTGGCCGGACTGGTCAAGTCGTACGGCGTGCT
GTATGTGGAGATTATGGAGACATTTCCCAGCTCTACGGCCACCGTGGCCT
CCTGGATTCCAGCGATCCTGTCGGCTCTATGTCTGGTCCTGGCCCGCTGT
CCAGTGCTCTTTGCCAAGCGATTCTCCTGCCGACGGTGGTCTTCGTCGGC
GGCATTTTCTGCGCCATGGGCATGATACTTGAGCTACTTTGCAACCAGTC
TGCTGCCACCTCCTCCTAACATTGGCGTACTCACAGGTATTGGAGGTTGC
CTCTCCGACCTACTCCGGGCATGTGATAGTTGTCCCAATACTTTGACAGG
CACCGTGCATTGGCCAATGGTAATCTGCGTTTCCGGGCACTGCGCCCGGA
AGCTTCATTCTAACCGGTCTGATAAAAGACATCTGCGGAGAAACGTGGGT
TCCCCAGGCAATATCGGATCCTGGCGGTGTCTGTCTTACGGTGGTCATTC
CGCCACCTTACGCGCTACTACGAGCCTTCAAC
FMO05706.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sln-RA | 3918 | CG8271-RA | 755..1937 | 36..1224 | 5300 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11848894..11849865 | 66..1038 | 4515 | 99.2 | Plus |
| 2R | 25286936 | 2R | 11849962..11850100 | 1034..1176 | 305 | 88.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:12:39 has no hits.
FMO05706.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:58 Download gff for
FMO05706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sln-RA | 755..1893 | 36..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:19 Download gff for
FMO05706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8271-RA | 753..1891 | 36..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:41 Download gff for
FMO05706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sln-RA | 755..1893 | 36..1181 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:41 Download gff for
FMO05706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11846078..11846110 | 36..68 | 100 | -> | Plus |
| 2R | 11848897..11849863 | 69..1036 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:58 Download gff for
FMO05706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7733583..7733615 | 36..68 | 100 | -> | Plus |
| arm_2R | 7736402..7737368 | 69..1036 | 99 | -> | Plus |
