FMO05707.5prime Sequence
1288 bp (1100 high quality bases) assembled on 2008-09-02
> FMO05707.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGATCTTAAGAATA
CTTCTACTGTCACTGGCGGCGGTGGCGCACGCGCAGTACCATCAGTTTGG
TGAGCAACTCCAGACGGCCCACGGATCCGACTGTGCACTTCTGTTGGCCG
GACCCGGTCGCTCCTCCGTCTACGACTACAATGTGAATCTATTTCGCGGC
ACTTTAAACCCGTACAACAATGGACCGGGCACTTGCATCACCTACGATGC
CATCAATGCGGCCTACTTGGATGCACGCAAGCGTATTCATGTGGCGCAGC
CAAAGTCTGACTGGAAGCCGGAGGAACTGGCCACCGTGGGCGAGCTGCTG
CTCGACATTTCCATTCAATTGGCCCGAACATATGGCTTATCGTATGAAGA
AATCGAAAAAGGATTACCTACGATTGATACCTCAAAGACGCTGATTCGTG
AGGTGTGTCCACCCTTCTTCGCTGGAGTTGAGTGTCGCCCTGGAAAATAT
CGCCGTTTCGATGGCCTTTGCAACAACATCGAGCACCCGACATGGGGGGC
AGCTAATGCTCCGTTCCAGCGCCTGATCGGTCCACTTTACTCGGACGGAA
TCAATGCTCCCAGAATTTCGGTGACTGGTCGGGATTTGCCCTTCTCTCGA
GTGGTTTCACGCACCATGCATCCCGACGACGGTTTCCACGATCACGCGGG
CACCGTTATGGTCATCGCCTGGGGTCAGTTCATGGATCACGACTTCACGC
TGACGGGAACGCCGTTGGATCCCATTAACCGTAACGATCCCGAGGAGTGC
TGCAAGCGACCATTGCATCTAAAGCATCCGTACTGCAATGAGATTCGCAT
TCCCGATGACGATTACTTCTATCGCCTGTTTAATGTCAAGTGCATTGACT
TCGTGCGTGGATTCCCCTCTCCTCGTCCAGGCTGCAAATTAGCTCCCGTC
AGCAGTTCAACACCTTGACTGGTGTCATCGATGCGAACACCGGTTTACGG
AGTGAAGGAGTCGTTTGCCCGCAAGCTTAGAACTGGCTACGGAGGTCTTG
ATGCCGCATGATCCCGTGTTCCAGGAGTACGGCCTGAAGGACTGCTTCCC
CTGGAGCTGGATATTCCCCGACGAGGATGCAAGCGTCCACAGAGAGCATG
TTACTGTTTCGAGGGCGGGGGAATCCGTGAGAGACACTGTGTGCTTCAGT
GCTGCCACTGATGGGCCGGAGACATTCAACTGCCAACTGTCATATGGCCG
CAATACACACACCGGTGGATGATGAGTAGAAGCTCGTG
FMO05707.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5873-RA | 3081 | CG5873-RA | 443..1575 | 36..1168 | 5360 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17443744..17444132 | 380..768 | 1945 | 100 | Plus |
| 3R | 32079331 | 3R | 17444309..17444483 | 768..942 | 875 | 100 | Plus |
| 3R | 32079331 | 3R | 17435904..17436064 | 45..205 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 17444583..17444808 | 942..1168 | 620 | 91.7 | Plus |
| 3R | 32079331 | 3R | 17441289..17441379 | 289..379 | 455 | 100 | Plus |
| 3R | 32079331 | 3R | 17440931..17441013 | 206..288 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:42:16 has no hits.
FMO05707.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:47 Download gff for
FMO05707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5873-RA | 435..1589 | 27..1180 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:21 Download gff for
FMO05707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5873-RA | 431..1585 | 27..1180 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:38 Download gff for
FMO05707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5873-RA | 435..1589 | 27..1180 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:38 Download gff for
FMO05707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17435880..17436064 | 22..205 | 93 | -> | Plus |
| 3R | 17440931..17441013 | 206..288 | 100 | -> | Plus |
| 3R | 17441289..17441379 | 289..379 | 100 | -> | Plus |
| 3R | 17444310..17444483 | 769..941 | 99 | -> | Plus |
| 3R | 17443744..17444132 | 380..768 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:47 Download gff for
FMO05707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13261602..13261786 | 22..205 | 93 | -> | Plus |
| arm_3R | 13266653..13266735 | 206..288 | 100 | -> | Plus |
| arm_3R | 13267011..13267101 | 289..379 | 100 | -> | Plus |
| arm_3R | 13269466..13269854 | 380..768 | 100 | -> | Plus |
| arm_3R | 13270032..13270205 | 769..941 | 99 | -> | Plus |
