FMO05710.5prime Sequence
1240 bp (1089 high quality bases) assembled on 2008-09-02
> FMO05710.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGGCTGCGCCA
GAGCAGCGGTGGAGGCGTTGCCTCCGTCGGACACGTCGGCCCACTGCGAC
AGCGACCCATCGACGCTGCCACAGACTGCGATCCGCGCGCTTGCTACGAC
AGCTTCTGTAAGCACTGGCAGCAGGCCTTCGAGATCATCCAGCACAGTGC
ACCGCCCTCGCACGACGACGTGCTGGGCGTGGTCTCGCACTTGGACTACA
TGGTCACCCTGCTGCTCGTGGAGCTGCATCACTGCAACAAAGTCTCGCTG
CCGGCGGCCGAGGCTAGTGGTCCGCCTGCGGCGCCCTGCCTGGAATTCCT
GCTCAGCGAGAATCTGCTGGACAAGCTGTACGAGTGGGCCTGCACCACGG
GACGGTATGCCAACGCTGTGAGGCTGGAGCAGCTGAAGCTGTACGAACTG
CTCGTCAGCCACTCGCGCCACCAGCTGCTCTGCCACGAGCCCTTCCTGCG
ACCCCTGCTCAAGATACTGGCATCCAGCCAGGGCGAGATCTTTCCGCCCG
ATCTCGAGAAGCGCCTGGTGATCCTGCTGAACCAGCTGTGCGTGGTTCTT
ATGCAGAATGTCCACCTGCTGGACCTCTTTTTCTTCTCCGCCCAGACGCA
GGTGCAGGAGCAGATATTAAATGGCAACGTGGCGCCACCCAAAAAGCGGA
ACCACTACCAACTTCATAATATTTTCGCTGCTTATCCCGTACGTGCATCG
CGAAGGCAGTCTTGGTCACCAAGCGCGCGATGCTCTGCTGCTGTGCATGG
CGCTTTCGCAGAAGAACTCCAACATTGGAACGTACATAGCCCAGTACTCC
TCGATCTGCCCGCTGTTGGTGACCGGTCTGGGTGGGGCTTTACTCGCGTC
TGCCCAACAGCATCGAGATTAGCTCCATCGACTGGCACCGGATAACGCCA
GACGATGTGACAGAGATCCCGGAGCTGACGCTTGTTCATGAACGCCCCGA
GTTTTGCAATGCGTGGTGCAGTGGCCCATGAGATAATCAAGCAGCAGTTG
CTGGACTTCATGTACAAGGGCTTTATTGTTCCGTGCTGGGACCTGCGATC
CTTCAAACGAACATCGACTCCAAATCTCGGCATGTCGTAACTGGAACTGT
ATCTGGCCTCCATACACGGATCCGGAACGCGTAGGGCCTCTTCCGGTTCC
TGCTTCAATCAGAAAAAGTGTTTGAACGCGCGATAGTGCG
FMO05710.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3558-RB | 4160 | CG3558-RB | 596..1767 | 37..1204 | 5310 | 97.5 | Plus |
| CG3558-RA | 4199 | CG3558-RA | 596..1767 | 37..1204 | 5310 | 97.5 | Plus |
| CG3558-RD | 4221 | CG3558-RD | 633..1702 | 37..1105 | 5160 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2993735..2994408 | 37..711 | 3325 | 99.9 | Plus |
| 2L | 23513712 | 2L | 2994674..2995069 | 712..1105 | 1660 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:41:01 has no hits.
FMO05710.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:28 Download gff for
FMO05710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3558-RA | 596..1714 | 37..1153 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:12 Download gff for
FMO05710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3558-RB | 605..1723 | 37..1153 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:33 Download gff for
FMO05710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3558-RA | 596..1714 | 37..1153 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:33 Download gff for
FMO05710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2993735..2994408 | 37..711 | 99 | -> | Plus |
| 2L | 2994674..2995070 | 712..1106 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:28 Download gff for
FMO05710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2993735..2994408 | 37..711 | 99 | -> | Plus |
| arm_2L | 2994674..2995070 | 712..1106 | 97 | -> | Plus |
