FMO05713.5prime Sequence
1245 bp (1037 high quality bases) assembled on 2008-09-02
> FMO05713.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTCAGTCGGC
TGGTAAAATAGTTCGCCGCTCACCCTCTTCATGTCCTGGCCCCAACAACC
TGCCTCCGCTGCAATTCCACTCCGTACATGGCGACAACATCCGAATTTCA
AGGGACGGAACCCTGGCCCGTCGCTTTGAGAGCTTCTGCAGGGCCATCAC
CTTTTCAGCGCGTCCGGTTCGCATCAACGAGAGGATCTGCGTGAAGTTTG
CTGAGATCTCGAACAACTGGAACGGTGGAATTCGCTTTGGATTCACCAGC
AACGATCCTGTAACGCTGGAGGGAACGCTGCCCAAGTACGCCTGTCCGGA
TCTGACCAACAGGCCTGGCTTCTGGGCCAAGGCTCTGCACGAGCAGTACT
GCGAGAAGGACAACATACTTTACTACTATGTCAATGGAGCTGGCGATGTG
ATCTATGGTATAAACAACGAGGAGAAGGGTGTGATACTGACCGGCATCGA
TACGAGAAGCCTGCTGTGGACGGTGATCGATATCTATGGCAACTGCACGG
GCATTGAGTTTCTCGATTCTCGCATTTACATGTACCAGCAGCAGCCAGCG
GCTATACCAATGGCCACTGTGCCCGCCCAGCAACAGCAAATGCCCCAGCC
AGCTGCCAATGCCTCCTCCGCCCTGAATTCCCATCACCCGCATCAGCAGT
CGAGGAGATCCCTGCCAGGACACACTGCGGCCATCGAGCACGATCTGGAG
CGCCATGTGATGCCGTCCCTGCAATCCCTGCACTTGGCAGAAACGGTGGA
AGCGTGGCTAGCGTAGAACAGCGGCCATTGCTCATGATTTGGCCAATGGA
CTGCCTCCTCTGCGCTACAATGCCAACGGACGACTGATTCCAGTGCCTTT
CACAACACCAAGGGCCGGAATGTGCGGCTCTCGCAGGATCGCTTTGTGGC
TCCTCGTACGGAATCTGACTTCTGCCAGGATATGTTGTTCACTGCCCGTC
CCATCGCATTGTGAGAAGCTGATTGTGCAGTCCTGAAACGGAACAGATGT
ACGTGGGTGCCTTGGCTTTGGGTCTGACTTCCTGCAATCGCCAGGTGCAG
CCCAATGATTTGCCAAATGAATCCGATTCCTGCTCGATCGCCCGAGAACT
GGGTGTGTACAAGAATTGGACTGTTCTAAGCGGCGATGAATGCCTCTCGG
CCACGTGATGACTCCAGAAACGACCCTTGGAGGGATAATGAACAA
FMO05713.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neur-RE | 3381 | CG11988-RE | 293..1423 | 37..1155 | 5200 | 98.1 | Plus |
| neur-RD | 3753 | CG11988-RD | 293..1423 | 37..1155 | 5200 | 98.1 | Plus |
| neur-RC | 3756 | CG11988-RC | 293..1423 | 37..1155 | 5200 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9022753..9023847 | 1143..60 | 4765 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:11:38 has no hits.
FMO05713.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:48 Download gff for
FMO05713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RC | 286..1432 | 25..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:27 Download gff for
FMO05713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RD | 282..1428 | 25..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:34 Download gff for
FMO05713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RC | 286..1432 | 25..1163 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:34 Download gff for
FMO05713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9022743..9023845 | 62..1151 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:48 Download gff for
FMO05713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4848465..4849567 | 62..1151 | 97 | <- | Minus |
