FMO05714.5prime Sequence
1230 bp (1030 high quality bases) assembled on 2008-09-02
> FMO05714.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGAGCAGCGAAACGGAGGA
GAAAAGATCGAAGGCTCAGCCCAATGGCTGTGAGCGAGCATTCGTCCAGG
GAAACAAGATTAAGTGGTTCTGGGCACCCGCCTTCTTTGGATTCTGGCTG
CTGCTCTATGTGACCATCTCGATACCCGCCTGCCACCGCCTTCCCCGCCC
ACTGACCATTCAGGATGAGGAAACGCATCCCGACCAGTTCATCGCCGAGC
GCGCAGAGAAAAATCTACGGGAGCTAGTGAGCCTGGGACCCCGAGTGGTG
GGCAGTCGACAGAATGAGATGGCCGCTTTGAAGATGCTCTCCCAGAAGAT
GCAAAAAATTCGATCCGGCACTGCCAACGATATTGAAGTGGATGTTCAGG
TGGCATCCGGTAGCTATGTTCACTGGTCCATGGTCAATATGTACCAGAGC
ATTCAGAATATTGTCGTTAAGATCAGTCCCAAGAACACGAACAGCACTAC
TTATCTTCTGGTAAACAGTCACTATGATTCCGTGCCGGCGGGACCTGGTG
CTAGTGATGATGGTTCCATGGTGGCCACTATGATGGAGGTACTCCGTGTG
CTGGCCAAGTCCGATAAGCCACTAAAGAACCCTGTGGTATTCCTGTTCAA
TGGTGCCGAGGAAAATCCCCTTCAGGCCTCGCATGCCTTCATCACCCAGC
ACAAGTGGGCCAAATATTGCAAAGCCCTTATCAATCTCGATTCCTGCGGA
AATGGCGGTCGAGAGATCCTCTTCCAATCGGGACCCAATCATCCCTGGCT
AATGAAGAACTACCGACGTGCCATCAAGCACCCGTATGCTTCTACAATGG
GCGAGGAGCTGTTCCAGCACATTTCATTCCCTCTGACACGGACTTCCGCA
TTTTCCGTGACCATGGATCGGTTCGCGGCTGGATATGGCTACACTACAAC
GGATTTGTCTACACACGCGACACGACAAGGCAGAGATCTTTGCCAGGGTA
GTTTCCAGCATACTGCGATAATCTGCTGCTTCGTCCGACAGATTGCACTC
TCGGAGATGGAAATCCACGAATACGCAAAGTCACCATCTGATTTCGATTT
TGGGTTGGTTCCGTTCCACACGACCGAGGCTATTCTGACGCATCTCTCTT
TGAATCACGGGAATGTACCGTAGCCTGTGCGTCACACTCGGCCAAGCCAG
AAATCTCGAGAAGAGTGTGCACACCTCGGT
FMO05714.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11961-RB | 2960 | CG11961-RB | 275..1374 | 31..1110 | 4885 | 97.5 | Plus |
| CG11961-RC | 3589 | CG11961-RC | 184..1252 | 62..1110 | 4730 | 97.4 | Plus |
| CG11961-RA | 2838 | CG11961-RA | 184..1252 | 62..1110 | 4730 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19359184..19359844 | 62..722 | 3290 | 99.8 | Plus |
| 2R | 25286936 | 2R | 19359909..19360220 | 723..1027 | 1180 | 97.1 | Plus |
| 2R | 25286936 | 2R | 19382142..19382259 | 414..531 | 245 | 80.5 | Plus |
| 2R | 25286936 | 2R | 19370207..19370289 | 459..377 | 235 | 85.5 | Minus |
| 2R | 25286936 | 2R | 12356466..12356532 | 644..710 | 230 | 89.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:12:51 has no hits.
FMO05714.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:05 Download gff for
FMO05714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11961-RB | 270..1321 | 22..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:28 Download gff for
FMO05714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11961-RB | 71..1122 | 22..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:46 Download gff for
FMO05714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11961-RB | 270..1321 | 22..1064 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:46 Download gff for
FMO05714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19359186..19359844 | 64..722 | 99 | -> | Plus |
| 2R | 19359909..19360263 | 723..1064 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:05 Download gff for
FMO05714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15246691..15247349 | 64..722 | 99 | -> | Plus |
| arm_2R | 15247414..15247768 | 723..1064 | 95 | | Plus |
