FMO05716.5prime Sequence
1234 bp (1008 high quality bases) assembled on 2008-09-02
> FMO05716.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGATGTCCAAGGTGG
CTCATGGCATTGTTTCAAATATGCGGTCAATACTTCCGAGGCTCGAGGCT
TCAGTAAAAGGCGGCCTCGTGTCTGTTAGAAGTACCAGCAAGAGACCCGA
GCTATCCGAGCACTTTACGCTGGATGAGATGGTGGCCAACGAGAAGCTGC
TTCAGTATGACGAGGGCTCAAAGGAACGCACGGAACTGGAAACCGCCCTG
CTGGGCGTTCTCAATAGGGTAGAGCACGTTCCCATCGTTATTAACGGCCA
GGAGTTCCAGGCCAAGGAGGACTTCCAACAGGTTCTGCCCTACGACATCC
AACAGCCCATTGCCCATTACGGTCATGCCCACCGCGTGCTCATCCAAATG
GCCATCGATAAGAGTGTGGAGGCGCAGGTGAAGTGGGACAAGGTCAGGCT
TAATGATCGAATTGATATTTGGGAGCGGGCAGCGATGCTAATTGCCGGAA
GATACCGCTACAACATCATTGCGGCCACGATGTTGGGCCAGGGAAAAACG
CTGCGCCAGGCGGAGATGGATGTAGCCGAGCTGGTGGACTTTATGCGCAT
TAATCCCGTCTTCCTGCGTGAGCTGGCCAACTACGAACCCATTAGAGACA
TCCAAAACAATTGCAGGAACTCCATGCGGTTGAGAGGACTTTCGGGATTT
GTGGCTGCCATCAGTCCGTTTAACTTTACGGGTATCGCCGCCAATCTGGC
CTATACGCCTGCCTTAATGGGCAACTCGGTGATCTGGAAGCCCTCTGACT
CGGCCATCCTGTCCAACTATTTCGTTTTCAATGCCCTGCGGGAGGCTGGA
GTGCCCGATGGTGTGGTGAACTTTGTGCCCGCCGAGGAGACACGTTTGCA
TCCGTAGTGACGCAACATCCGAATTGGCGGGGATAACTTCACTGGTACCA
CAACGGTGCTCATGTGCTCTGGCAACTGGTGACCAGAATATAAATTTCTA
TCAGAACTATTCCCGTTGGTGGGCGAGGGAGGCGGCAGAATTTCACTTCG
TACCTCCTTCGGCGGACGGAACGGGGGTGACTGACCGAAAAGCTGCATTG
ATACCCGCCGAATGCTCCTCTGTCCAGTTTGACGTACGGATCCTGTGCCA
TTCATCGAGACCTCTGAATCTGATCTGATGACATTCCAATGGGAGTTGCG
CGTATCACGCACGGCTACGCGAGATGCACTCCAT
FMO05716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5CDh2-RC | 2306 | CG33092-RC | 397..1436 | 35..1066 | 4865 | 98.5 | Plus |
| P5CDh2-RB | 2312 | CG33092-RB | 403..1442 | 35..1066 | 4865 | 98.5 | Plus |
| P5CDh2-RA | 2472 | CG33092-RA | 563..1602 | 35..1066 | 4865 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21878809..21879391 | 114..696 | 2900 | 99.8 | Plus |
| 3R | 32079331 | 3R | 21879447..21879795 | 695..1037 | 1370 | 96.8 | Plus |
| 3R | 32079331 | 3R | 21878498..21878577 | 35..114 | 400 | 100 | Plus |
| 3L | 28110227 | 3L | 21838564..21838664 | 885..785 | 205 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:30 has no hits.
FMO05716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:01 Download gff for
FMO05716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5CDh2-RA | 463..1518 | 35..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:29 Download gff for
FMO05716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33092-RC | 397..1452 | 35..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:27 Download gff for
FMO05716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5CDh2-RA | 563..1618 | 35..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:27 Download gff for
FMO05716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21878498..21878577 | 35..114 | 100 | -> | Plus |
| 3R | 21878810..21879390 | 115..695 | 99 | -> | Plus |
| 3R | 21879448..21879795 | 696..1037 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:01 Download gff for
FMO05716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17704220..17704299 | 35..114 | 100 | -> | Plus |
| arm_3R | 17704532..17705112 | 115..695 | 99 | -> | Plus |
| arm_3R | 17705170..17705517 | 696..1037 | 96 | == | Plus |
