FMO05718.5prime Sequence
1259 bp (1056 high quality bases) assembled on 2008-09-02
> FMO05718.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCATCCCAATT
ATTGCAGGTTGAAGATCAGACCTTCTCAGCGCACCGCGTTGTGCTGGCGG
CCACCATCCCGTATTTCTATGCGATGTTCACCAACAACATGGCAGAGAGT
CGGATCAAGGAGATCACCATGAAGGAGAGCGCCATAGAGCCAAGTGCCCT
GGAGAGTCTGATCAACTATGTTTACAGCGGCCAAGTGCGCATCGACAACC
AGAATGTGCAGAACCTGATGGTGGGCGCCAGCTTCCTGCAATTGTCCAAC
GTGCGGGATGCCTGTGCCAGTTTCCTGATCTCCCGCTTTCATCCGCACAA
TGTCCTGGGAATCCGCACCTTCGCCGACTCCATGATCTGCCGGCAGCTAA
TCGACGCTGCCGACAAGTATATTGATCAAAACTTTGCCAAAGTCTCGCAG
TCGGAGGAGTTTCTCGCCCTGGACTGCGAACAATTGCTGGAGCTGATGCG
CCGGGACGAACTCAACGTACGCACCGAGGAGGTCATCTTCGAGGCCTGCA
TGAAGTGGGTCAAGTACGCAGAAGACAAGCGCTCTGAGCTCTTTCCTCAG
GTCCTGGCTGCAGTGCGTTTGCCATTGCTCTCGCCTCAGTTCCTGGCGGA
CCGTGTGGCCCGCGAGGAACTCATTCGATCCTCGCACCAATGCCGTGATC
TCCTAGACGAGGCCAAGGACTTTCACCTCATGCCCGAGCGCAGGGGTCTG
CTGCAGAGCTTTCGCACGCGCCAGAGATCCGGTGAGTTCTTTACCGGACA
AATATACGCCGTGGGAGGACTGGCCAGCACTGGGGAATCTGTGAGCACGG
TCGAGATTTACGATCCGCTCACCAAAAAATGGAAATGGGCGAACAAATGT
CCATGATGAGATCTCGCGTGGTGTGGCCGTTCTGAATGGCAGCTGTACGC
CTTTGGTGGATTCATGCACCGACGTCTGTCCACCGTTGAGGTCTACGACC
GCGCAAAAACAGTGGTCCCATGGCTGGTGCATGCTTCTGCAAACGCAGCG
CCGTTGGGCGTGGCCGCATTGATGATTGTATCTAGTGGTGCGCGGCTACG
ACGGCGTCACGTCGCCTCACACCGTTGAGTTACATCCAAGTCTAACACTT
GGAACACGTTGCTCATGATGAATCCTTCGCTGGGGAATCCATGAACGGCT
ACTCTACCCTGGCGCCTCTTATGTGTTCCAATTCATATTCGTGAAACGCT
TCACAGGGA
FMO05718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KLHL18-RB | 2199 | CG3571-RB | 271..1421 | 37..1172 | 5135 | 97.7 | Plus |
| KLHL18-RC | 2292 | CG3571-RC | 192..1323 | 56..1172 | 5040 | 97.6 | Plus |
| KLHL18-RA | 2101 | CG3571-RA | 192..1323 | 56..1172 | 5040 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12009290..12010164 | 910..37 | 4325 | 99.9 | Minus |
| 3R | 32079331 | 3R | 12009003..12009229 | 1128..909 | 465 | 90.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:15:10 has no hits.
FMO05718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:46 Download gff for
FMO05718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KLHL18-RB | 271..1421 | 37..1172 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:32 Download gff for
FMO05718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3571-RB | 203..1353 | 37..1172 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:21 Download gff for
FMO05718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KLHL18-RB | 271..1421 | 37..1172 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:21 Download gff for
FMO05718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12008970..12009227 | 911..1157 | 91 | <- | Minus |
| 3R | 12009290..12010164 | 37..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:46 Download gff for
FMO05718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7834692..7834949 | 911..1157 | 91 | <- | Minus |
| arm_3R | 7835012..7835886 | 37..910 | 99 | | Minus |
