FMO05719.5prime Sequence
1235 bp (1047 high quality bases) assembled on 2008-09-02
> FMO05719.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGGAGCGCAGG
AGTCACATACAGATGGCGCCGCCACCGCCGCCCCCCAAGCCAAACAAATC
GCAGACAGCCAATGGAAATGGTATTGGGAACGGCACAGGCATAGGAACGG
GCACTGGCAACGGAACCCTGCCGAATGGCAATAAAAACTATAACAAAATT
GTCGCAGTCCAAGACCAGGAGCCGCTGGCTCAGAACTCGAGCGGCGTTCA
AAGGAGCCAGTCGCCACCACGCACAGAACAGGTTGTGATGACGCCACGCG
GTAAAACGGCCAACAGTACGGTGATCCTCATCGAACGCAAACTGGTCGAT
GAGATCAATGATCGCGTTCATGTCGCCGGCGGTGATCATACGGGCATCAT
CATTAACAAGGACACGGTCGCCGGACAGAAGAGCGCCAGCAAGGCGGCAG
CGCTATCGCTGGAATTCCGCGTCTTTCTGGTCAGCGCCAATACGGGCAAG
CATTCGCAGGAGTCGCGCACCCTGCGCTTCTGGTTCCGCGACTGGCTGAC
CAACGAGGAGAAGCAGGCGCACATAGCCCAGGACTTCTTCAAGGAGCTGG
TCAGTCCGCAGGACTTTCCCAGAGACTACGTGGGCTTCATCAAGAAGATA
ATGAAGCTCCTGCAGCACGGATACTCGGAGATCCAGTCGATCGAGATTGA
GCTGCGCATCCTGGAGGAGACATCCGCACCACCCTCGCGACCACTTTCGC
TCGAGGAATCGCAGTTCGAATCACCGCCGTTGACTCAGAGAAGGTGCTGG
AGCTCATCGAGCACGCATATCCCAATCCCGTGTCCCCCGAGGATCTGGCC
AAGATTACGGCTGGAGCGAGCAGATGTGCTGCTGGTGATCAAGTCACTGC
AGAGCGCGGTCTGATCAAGTCGATGGAGTACAATGCGTACACTCGCATCC
ATCACGAGGACAGGAGATTAAGTGGTCAAGCAGATGCCCACGATCGCCTC
ACAAGCAGCCACATTGCCATCATCACGGCGCATATTGCGAGAAGCTCGCC
GTGACGCAATGCCTCGAGAACAGGAGAATCGTCGATACACCCACAAGTCG
GATCGATGTGTTATCTCTGGGCAATCGGGCGCCCAGATCGGACACACAGC
TCCGTCGTGCGCAATCGAGGCGAACGACGGCATCCACTGTCTGTGGCATT
ACAAGTCCGCAATGTTTTCTCTGGGCGTAGCCGTG
FMO05719.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12065-RF | 2658 | CG12065-RF | 371..1478 | 35..1125 | 4950 | 97.7 | Plus |
| CG12065-RE | 2652 | CG12065-RE | 365..1472 | 35..1125 | 4950 | 97.7 | Plus |
| CG12065-RD | 2515 | CG12065-RD | 228..1335 | 35..1125 | 4950 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8583666..8584255 | 35..624 | 2950 | 100 | Plus |
| X | 23542271 | X | 8585987..8586196 | 853..1053 | 655 | 95.2 | Plus |
| X | 23542271 | X | 8584454..8584575 | 623..744 | 610 | 100 | Plus |
| X | 23542271 | X | 8585810..8585919 | 745..853 | 485 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:14 has no hits.
FMO05719.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:14 Download gff for
FMO05719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-RD | 224..1259 | 28..1053 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:33 Download gff for
FMO05719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-RD | 192..1227 | 28..1053 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:05 Download gff for
FMO05719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-RD | 222..1257 | 28..1053 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:05 Download gff for
FMO05719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8585986..8586196 | 853..1053 | 95 | == | Plus |
| X | 8583660..8584255 | 28..624 | 99 | -> | Plus |
| X | 8584456..8584575 | 625..744 | 100 | -> | Plus |
| X | 8585810..8585918 | 745..852 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:14 Download gff for
FMO05719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8479843..8479951 | 745..852 | 98 | -> | Plus |
| arm_X | 8477693..8478288 | 28..624 | 99 | -> | Plus |
| arm_X | 8478489..8478608 | 625..744 | 100 | -> | Plus |
| arm_X | 8480019..8480229 | 853..1053 | 95 | == | Plus |
