FMO05720.5prime Sequence
1261 bp (1063 high quality bases) assembled on 2008-09-02
> FMO05720.5prime
TCTCGAGGGATCCATAACTTCGTATAGCATACATTATACGAAGTTATCAG
TCGACATGTCGGCGCAGGAAAAGGTTATACGCGTTGGATCGCGAAAGAGC
GAGCTCGCTCTGATTCAGACCAAACATGTCATCGGCCGCCTGCAGAAGCT
ATATCCCAAGCAGAAATTCGAGATCCACACCATGTCGACATTTGGCGATC
GTGTGCTGAACGTTTCCCTTCCTAAGATTGGCGAGAAGAGCCTGTTCACC
CGCGACCTCGAGGATGCGCTGCGCAACGGTGGCGTTGACTTTGTGGTGCA
CTCCCTCAAGGATCTGCCTACAGCCCTGCCAACAGGAATGGCCATCGGAG
CCGTGCTGGAGCGAGAAGATGCGCGGGACGCCCTCGTTCTGCGGGAGAAC
TTCAAGGGCCACACGATAGCCTCGCTTCCAAAGGGCAGCGTGATTGGAAC
CTCATCTCTTCGTCGCACAGCCCAGATTCGCAGGATGTATCCCCATTTGA
CGGTGTGCGACATCCGTGGAAATCTAAATACTCGACTGGCCAAGCTGGAT
GCAGCCGATTCCAAGTTCTCCGGCATCATACTCGCTCAGGCCGGCTTGGT
GAGAATGGGCTGGATGAGTCGTATTAGCCAGGTGCTGGAGCCGACCGACT
TGCTCTATGCTGTTGGCCAAGGAGCCCTGGCCGTGGAGTGTCGGGCTAAT
GACGACCAAGTGCTGGCAATGCTGCAGAAACTTATGTGCCTGAATACAAC
GTGCCGCATCCTAGCAGAACGAAGCTTCCTGAAGACTTTGGGAGGGGGTT
GCTCCGCCCCCGTGGCTGTTTGGAGCAACTTAAAGGGCGAGCCCTTGAAT
GGAAACAGCCAGGAGGTGGGACTATCCCTCACCGGTGCAGTTTGGAGCCT
GATGGTGCAATAGAGATACGGAACCATCTGGCATGTGCCTTAAATGAACA
AAATTGGAGGGGACCAACGGAAACGAGGGGCCCAGGAGGCAACCAGCCAG
TTGCAGAGAGACCAGCAGCAGCTGCGATTCTCCCCCGGCCACGAAGCGTG
CAGAAATGCCACGACAGTCGGGTTCGACCTCGATTCCAGCCATTCCGCGC
CAGCAGCAGCCCTCCAGGATCTTTGAGGATGCCGCTGCTTGCCACTCCTT
CGGTACTGTGGAATCAGCCTCGATCTGGCCAGTCACTGCCAAGCTGATAC
ACATGCTGGACTACGAGATTATGTGTGCATGCGATCCACAGTGAAACACA
TCCGTTCAGGT
FMO05720.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)02640-RA | 2556 | CG9165-RA | 353..1505 | 56..1190 | 5135 | 97.4 | Plus |
| CG2211-RA | 1941 | CG2211-RA | 72..119 | 103..56 | 240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1337602..1338309 | 446..1142 | 2865 | 96.6 | Plus |
| 3L | 28110227 | 3L | 1337271..1337541 | 177..447 | 1355 | 100 | Plus |
| 3L | 28110227 | 3L | 1335942..1336016 | 102..176 | 375 | 100 | Plus |
| 3L | 28110227 | 3L | 1335241..1335288 | 56..103 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:57 has no hits.
FMO05720.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:41 Download gff for
FMO05720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)02640-RA | 353..1520 | 56..1203 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:35 Download gff for
FMO05720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)02640-RA | 365..1532 | 56..1203 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:38 Download gff for
FMO05720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)02640-RA | 353..1520 | 56..1203 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:38 Download gff for
FMO05720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1335241..1335288 | 56..103 | 100 | -> | Plus |
| 3L | 1335944..1336016 | 104..176 | 100 | -> | Plus |
| 3L | 1337271..1337540 | 177..446 | 100 | -> | Plus |
| 3L | 1337603..1338379 | 447..1203 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:41 Download gff for
FMO05720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1335241..1335288 | 56..103 | 100 | -> | Plus |
| arm_3L | 1335944..1336016 | 104..176 | 100 | -> | Plus |
| arm_3L | 1337271..1337540 | 177..446 | 100 | -> | Plus |
| arm_3L | 1337603..1338379 | 447..1203 | 95 | | Plus |
