FMO05721.5prime Sequence
1260 bp (1044 high quality bases) assembled on 2008-09-02
> FMO05721.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTATCGCCGCGC
AAGCTGGCATCGTCCTACGGCCCAAGAGTATCCCAATCGGAACCGAACAA
TCTGATGGCAGCGTCGGCAAAGAGCTGTGAGAGCCTATTCTCGGCCAGCT
CCCGGGAGTCGGCCAGCCTGATCTACCAGCGCAGCAAGCCGCCACCGCCC
CAACAACGTGGCGGCGTGAAGGGTTCCGGCAGTATGAGCTCCCAGAACCA
CAGCGAGATCCATCAGCGCGTCATGTCCGCGAGGAATCTGCGCGCCAAGA
CCTTCCAGAACCAACTGGCCGATGCCCAGGCGGAGATTGCCAATCTGGCG
CACGAGAATCGCATGCTGCGCACGCTTCACAATCGCCAGTCATCGGCGCT
GAATAAGTACGAGGCCCACAACGCTGAGCTGCCCAAGTTGCTAAGCTCAC
ATGCCGAGGAGCTGCGCATGTGGCAGACCAAGTACCGCAAACTGCAGGCT
GCGAACAAGGCTCTGGAGCTAAAGCTCAAGCAGAAGGAGGAAATCATCCT
GACGCTGAGCGATCAGAACAAGCACTACAGTCAGCTCAACAAGGATAAGA
ATCTCGACGAGCGGCAAAAGCTTCAGGAGAAGTTAAAATCCCTGGAGCAG
CGTCTGGAGGAGAAGGACAACGACATGAAACTGATGGCCCGCAAGGTGCA
GCTGGAGTCGAAGAACATCCGCCAGCAACTGCTCAACGAGCAAAGGAAGG
GCAAGGAGGTGATGCTGAAGCTGGAGAAGCCAAGCTGGAGATCAGTGGAT
ACCGCAAGCTGGAGGAGTACACTCTCGGCACTGACAAGGTGAATCCCCTG
TCCTCCGGTCGACGAACCAACTGAGTGGCGTCACCGATGAGCCGGACAAG
ATCGACAAGTTGGAGAAGTCAATGGAGATGCTGGACAGGCCATCGAGAAG
AACAACCAAGAGCGAAATCCCGGCCTTGACGGATGTGATGGAGTCGGAAT
CGTTCTACGATTTCGAAAGACAGTGCCGAAGACAAAAGTGACCCACACTC
CACTAGTCAAATCGACGACGGTGGGCGGGCGCGCCGGTTAGCTTATTCTG
CCGCCCGCCACGAACAGGCTAGATGGACAGAGCAATCGGTCACTTGGAGC
AAGTGCTCTCGCCCAGGGAGATTCGGATCTTCTGATCCTGCTAATCACGA
TTGCGCGGTGCAGTGCCGAAATAGAAGAGTGGATCCGAGTGATGTAGCAG
GCCTGCGCGC
FMO05721.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6652-RA | 2244 | CG6652-RA | 224..1434 | 36..1220 | 5200 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17021997..17022486 | 599..110 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 17021700..17021925 | 823..599 | 1080 | 99.6 | Minus |
| 3L | 28110227 | 3L | 17021347..17021646 | 1115..824 | 955 | 94 | Minus |
| 3L | 28110227 | 3L | 17022560..17022633 | 109..36 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:34 has no hits.
FMO05721.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:04 Download gff for
FMO05721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 224..1448 | 36..1236 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:36 Download gff for
FMO05721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 224..1448 | 36..1236 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:29 Download gff for
FMO05721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 224..1448 | 36..1236 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:29 Download gff for
FMO05721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17021700..17021925 | 599..823 | 99 | <- | Minus |
| 3L | 17021998..17022486 | 110..598 | 100 | <- | Minus |
| 3L | 17022560..17022633 | 36..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:04 Download gff for
FMO05721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17014800..17015025 | 599..823 | 99 | <- | Minus |
| arm_3L | 17015098..17015586 | 110..598 | 100 | <- | Minus |
| arm_3L | 17015660..17015733 | 36..109 | 100 | | Minus |
