FMO05722.5prime Sequence
1286 bp (1053 high quality bases) assembled on 2008-09-02
> FMO05722.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTTAAAGGTGTT
CCCACGCTAGCCGGTCGAAACCTTCGTCTCCTGACGACCCAGGCACAGGT
GCTGGTCCATCAACGCGCCAAAGCGTCCGCCGCCGAGCCCGTCGAGGACT
TTGACCAGGAGACGGATCTTTTGAAGCGCGCCAAGTTCGGACACACGGGC
AAACAGCTGCAGCAGAAAATAATCAATGAGAAAAATCTGCGCGCTCCACC
GCTTATGAACTTGGTGTTTGCCAATCGGAAGTTGTCCTTCTACGATACCA
GTTCCACTCCCAAGACCAAAGAGGATAATGCCAAGCTCAGTCAGAGACGC
CACTATTCGATGCGGCCCCATCGCGAGCAGGAGCAGCGAAATGCGGAGGA
TGTGCTATTCGACATGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATGG
GCAAGTTCCTGGCCGGGCTAAAGACCACCGGAATTCGCCGGAACGATCCG
CGAGTGCGAGAACTGATGGACAACTTGAAGAAAGTGCACAAGCTAAATAA
CTACGAGACGGGTTCTTCGGCGGAAACTCAGCATCTCAATCGAGAGACCT
TCAAGGCTGTGGTTGCCCCCAATATTGTGCTGATTGCCAAGGCCTTCCGG
CAGCAGTTCGTTATTCCCGACTTTACGAGTTTCGTCAAGGACATCGAGGA
TATTTACAATCGCTGCAAGACCAACACTTTGGGCAAGTTGGCCGACTACA
TTCCGCAGCTGGCTCGCTATAATCCCGATTCCTGGGGCCTGAGCATCTGC
ACGATTGATGGCCAGCGCTTCTCCATCGGCGATGTGGATGTGCCCTTCAC
ACTCCAGAGTTGCAGTAAGCCGCTGACCTACGCCATTGCCCTGAGAAACT
GGGTCCCAAGGTCGTGCACTCTTATGTGGGCCAGGAGCCGAGTGGCAGGA
ACTTCAACGAACTTGTTCTGGATCAGAAAAAAAGCCACACAATCCGATGA
TCAACGGCTGGTGCCATTCTGACGTGCTCCTGATGAACGCCCTTGTCAAG
CCGGACCTGACCTCCGCTGAAATCTTCCACTAACCATGTCTTGGTTCAAC
GGCTGTCCGGGCGGAGAAGTATATTCGGCTTATAATGGCCGTATTTCTGT
TCGAACGGCAGGCTCGCGATCGAACTATGCCTGGCTTTCTCCTTGCGGGA
CATGCTCCAACGCCACAATCTCAAGAGAGGTGATGACTTTATTTCCAGGT
GCGTGTCTCTCTCGTGAGAGAGACACAACACGCTCC
FMO05722.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RD | 2912 | CG42708-RD | 192..1360 | 36..1200 | 5335 | 97.7 | Plus |
| CG42708-RC | 2741 | CG42708-RC | 93..1066 | 231..1200 | 4360 | 97.2 | Plus |
| CG42708-RB | 2970 | CG42708-RB | 429..1295 | 338..1200 | 3825 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12672666..12673037 | 978..608 | 1810 | 99.7 | Minus |
| 2R | 25286936 | 2R | 12673100..12673339 | 607..368 | 1200 | 100 | Minus |
| 2R | 25286936 | 2R | 12679208..12679402 | 230..36 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 12676125..12676233 | 337..229 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 12672395..12672587 | 1172..980 | 425 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:59:28 has no hits.
FMO05722.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:21 Download gff for
FMO05722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RD | 186..1324 | 30..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:22 Download gff for
FMO05722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RD | 182..1320 | 30..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:14 Download gff for
FMO05722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RD | 186..1324 | 30..1167 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:14 Download gff for
FMO05722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12673100..12673339 | 368..607 | 100 | <- | Minus |
| 2R | 12673899..12673928 | 338..367 | 100 | <- | Minus |
| 2R | 12676125..12676231 | 231..337 | 100 | <- | Minus |
| 2R | 12679208..12679408 | 30..230 | 98 | | Minus |
| 2R | 12672664..12673037 | 608..979 | 99 | <- | Minus |
| 2R | 12672467..12672587 | 980..1099 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:21 Download gff for
FMO05722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8559972..8560092 | 980..1099 | 95 | <- | Minus |
| arm_2R | 8560169..8560542 | 608..979 | 99 | <- | Minus |
| arm_2R | 8560605..8560844 | 368..607 | 100 | <- | Minus |
| arm_2R | 8561404..8561433 | 338..367 | 100 | <- | Minus |
| arm_2R | 8563630..8563736 | 231..337 | 100 | <- | Minus |
| arm_2R | 8566713..8566913 | 30..230 | 98 | | Minus |
